miRNA display CGI


Results 101 - 120 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 24218 0.77 0.095123
Target:  5'- uGCCgGuuaGCGUCGUCGugGUUGC-CGCCg -3'
miRNA:   3'- -UGGgC---UGCAGCAGCugCAGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 10781 0.69 0.329973
Target:  5'- gGCCUGcaucgucGgGUCGUCGGCGUCGgCgGCa -3'
miRNA:   3'- -UGGGC-------UgCAGCAGCUGCAGCgGgCGg -5'
12775 3' -60.3 NC_003387.1 + 8123 0.69 0.315739
Target:  5'- gGCCCGACGgCGUCGcuCGacuccuugaggaUCGCCUuGCCc -3'
miRNA:   3'- -UGGGCUGCaGCAGCu-GC------------AGCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 51410 1.11 0.000315
Target:  5'- uACCCGACGUCGUCGACGUCGCCCGCCa -3'
miRNA:   3'- -UGGGCUGCAGCAGCUGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34497 0.68 0.404551
Target:  5'- aACCCGcgggcgaccAgGUCGcCGGuCGUCGCgUCGCCg -3'
miRNA:   3'- -UGGGC---------UgCAGCaGCU-GCAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 6690 0.67 0.413372
Target:  5'- cCUCGACGaCGcUCGGCGUCuuGCaCCGCg -3'
miRNA:   3'- uGGGCUGCaGC-AGCUGCAG--CG-GGCGg -5'
12775 3' -60.3 NC_003387.1 + 17463 0.67 0.42231
Target:  5'- uACCCGcggcgccaguUGUCGUCGGCGUacuugcgggCGCCgCgGCCg -3'
miRNA:   3'- -UGGGCu---------GCAGCAGCUGCA---------GCGG-G-CGG- -5'
12775 3' -60.3 NC_003387.1 + 9024 0.69 0.322423
Target:  5'- cACCUGGCGggcgcCGUCGGCGauccacgccaggaUCGCgUCGCCc -3'
miRNA:   3'- -UGGGCUGCa----GCAGCUGC-------------AGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 22517 0.67 0.431364
Target:  5'- cGCUCGACGUCGgcguaccggcUCGGCGacugcuccUUGCCCGa- -3'
miRNA:   3'- -UGGGCUGCAGC----------AGCUGC--------AGCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 33733 0.67 0.431364
Target:  5'- gGCCC-ACGccgccagcUCGUCGAUGcUCGCCggggUGCCg -3'
miRNA:   3'- -UGGGcUGC--------AGCAGCUGC-AGCGG----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 37115 0.67 0.431364
Target:  5'- aACCCGuuGUCG-CGAuaaugguccgagUGUUGCCCGgCa -3'
miRNA:   3'- -UGGGCugCAGCaGCU------------GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 7620 0.69 0.338428
Target:  5'- cACCgCGGCGUCGaCGACc-UGgCCGCCg -3'
miRNA:   3'- -UGG-GCUGCAGCaGCUGcaGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 32879 0.67 0.42231
Target:  5'- cGCgUCGGCGUCGUCGAgagauUGauUCGaCCCGCg -3'
miRNA:   3'- -UG-GGCUGCAGCAGCU-----GC--AGC-GGGCGg -5'
12775 3' -60.3 NC_003387.1 + 22993 0.69 0.346249
Target:  5'- cGCCCGcguagcugcCGUCGUCGGCcuggGCgCCGCCg -3'
miRNA:   3'- -UGGGCu--------GCAGCAGCUGcag-CG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 26196 0.74 0.153461
Target:  5'- uGCCUGACGgcUCGUCGuCGUCGgCCuCGCa -3'
miRNA:   3'- -UGGGCUGC--AGCAGCuGCAGC-GG-GCGg -5'
12775 3' -60.3 NC_003387.1 + 29734 0.75 0.131088
Target:  5'- gGCCuUGcCGUCGUCGGCGcCGCCCGaCa -3'
miRNA:   3'- -UGG-GCuGCAGCAGCUGCaGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 7892 0.76 0.123995
Target:  5'- gACCUGGCuGUCGUCGAUccacacgacgucgGUCaGCCCGUCg -3'
miRNA:   3'- -UGGGCUG-CAGCAGCUG-------------CAG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 42703 0.77 0.092588
Target:  5'- cUUCGGCucGUCGUCGuCGUCGCCCgGCCg -3'
miRNA:   3'- uGGGCUG--CAGCAGCuGCAGCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 35596 0.8 0.061502
Target:  5'- aGCCgguCGAgGUCGUCGAgCGUCGCCCccGCCa -3'
miRNA:   3'- -UGG---GCUgCAGCAGCU-GCAGCGGG--CGG- -5'
12775 3' -60.3 NC_003387.1 + 5736 0.85 0.028266
Target:  5'- gGCCCG-CGcUCGUCGuCGUCGCCCGCa -3'
miRNA:   3'- -UGGGCuGC-AGCAGCuGCAGCGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.