Results 121 - 140 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 6893 | 0.69 | 0.323172 |
Target: 5'- uCCgCGGCGUCGUCG-CGg-GCCaucaGCCg -3' miRNA: 3'- uGG-GCUGCAGCAGCuGCagCGGg---CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 36662 | 0.69 | 0.322423 |
Target: 5'- uGCCCGACGaccUCG-CGGaucauguCGUCGCCagugaCGCCg -3' miRNA: 3'- -UGGGCUGC---AGCaGCU-------GCAGCGG-----GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 9024 | 0.69 | 0.322423 |
Target: 5'- cACCUGGCGggcgcCGUCGGCGauccacgccaggaUCGCgUCGCCc -3' miRNA: 3'- -UGGGCUGCa----GCAGCUGC-------------AGCG-GGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 48153 | 0.68 | 0.370483 |
Target: 5'- gGCCuCGGCGagcagcUUGUCGGCcuugucguaGUCGCCCGUUu -3' miRNA: 3'- -UGG-GCUGC------AGCAGCUG---------CAGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 9998 | 0.69 | 0.315739 |
Target: 5'- cGCCCuGACGagcagGUCGGCGUUGCCgGUa -3' miRNA: 3'- -UGGG-CUGCag---CAGCUGCAGCGGgCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 5736 | 0.85 | 0.028266 |
Target: 5'- gGCCCG-CGcUCGUCGuCGUCGCCCGCa -3' miRNA: 3'- -UGGGCuGC-AGCAGCuGCAGCGGGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 35596 | 0.8 | 0.061502 |
Target: 5'- aGCCgguCGAgGUCGUCGAgCGUCGCCCccGCCa -3' miRNA: 3'- -UGG---GCUgCAGCAGCU-GCAGCGGG--CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 42703 | 0.77 | 0.092588 |
Target: 5'- cUUCGGCucGUCGUCGuCGUCGCCCgGCCg -3' miRNA: 3'- uGGGCUG--CAGCAGCuGCAGCGGG-CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 24218 | 0.77 | 0.095123 |
Target: 5'- uGCCgGuuaGCGUCGUCGugGUUGC-CGCCg -3' miRNA: 3'- -UGGgC---UGCAGCAGCugCAGCGgGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 7892 | 0.76 | 0.123995 |
Target: 5'- gACCUGGCuGUCGUCGAUccacacgacgucgGUCaGCCCGUCg -3' miRNA: 3'- -UGGGCUG-CAGCAGCUG-------------CAG-CGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 29734 | 0.75 | 0.131088 |
Target: 5'- gGCCuUGcCGUCGUCGGCGcCGCCCGaCa -3' miRNA: 3'- -UGG-GCuGCAGCAGCUGCaGCGGGCgG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 26196 | 0.74 | 0.153461 |
Target: 5'- uGCCUGACGgcUCGUCGuCGUCGgCCuCGCa -3' miRNA: 3'- -UGGGCUGC--AGCAGCuGCAGC-GG-GCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 21041 | 0.74 | 0.161658 |
Target: 5'- cGCCUGACca-GUCGGCGUCGaaCGCCg -3' miRNA: 3'- -UGGGCUGcagCAGCUGCAGCggGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 18583 | 0.74 | 0.170247 |
Target: 5'- gACCCaGGCGUCa--GG-GUCGCCCGCCu -3' miRNA: 3'- -UGGG-CUGCAGcagCUgCAGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 7449 | 0.74 | 0.170247 |
Target: 5'- cGCCCGACGggGUCGGCGUgGCgauccauuccagCCGCg -3' miRNA: 3'- -UGGGCUGCagCAGCUGCAgCG------------GGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 30897 | 0.73 | 0.174693 |
Target: 5'- cGCCgGgaaaGCGUUGgucgccaCGGCGUCGCUCGCCg -3' miRNA: 3'- -UGGgC----UGCAGCa------GCUGCAGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 11015 | 0.73 | 0.183896 |
Target: 5'- cCCCGGCcgccuUCGUCGGCGcCGCgaCGCCg -3' miRNA: 3'- uGGGCUGc----AGCAGCUGCaGCGg-GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 32418 | 0.73 | 0.188656 |
Target: 5'- uACCgGACGcCGUUGACGUagcaGCCCaGCUc -3' miRNA: 3'- -UGGgCUGCaGCAGCUGCAg---CGGG-CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 2323 | 0.73 | 0.188656 |
Target: 5'- cGCCCGACGUacaGcUCGGCGgugUCGaggCCGCCg -3' miRNA: 3'- -UGGGCUGCAg--C-AGCUGC---AGCg--GGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 31734 | 0.73 | 0.193032 |
Target: 5'- -gCCGACGagagcuaUCGcggcauucgCGGCGUUGCCCGCCc -3' miRNA: 3'- ugGGCUGC-------AGCa--------GCUGCAGCGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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