miRNA display CGI


Results 141 - 160 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 11015 0.73 0.183896
Target:  5'- cCCCGGCcgccuUCGUCGGCGcCGCgaCGCCg -3'
miRNA:   3'- uGGGCUGc----AGCAGCUGCaGCGg-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 30897 0.73 0.174693
Target:  5'- cGCCgGgaaaGCGUUGgucgccaCGGCGUCGCUCGCCg -3'
miRNA:   3'- -UGGgC----UGCAGCa------GCUGCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 7449 0.74 0.170247
Target:  5'- cGCCCGACGggGUCGGCGUgGCgauccauuccagCCGCg -3'
miRNA:   3'- -UGGGCUGCagCAGCUGCAgCG------------GGCGg -5'
12775 3' -60.3 NC_003387.1 + 18583 0.74 0.170247
Target:  5'- gACCCaGGCGUCa--GG-GUCGCCCGCCu -3'
miRNA:   3'- -UGGG-CUGCAGcagCUgCAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35668 0.71 0.242455
Target:  5'- cACUCGaucGCGUCcUCGACGaCGCCCGgCg -3'
miRNA:   3'- -UGGGC---UGCAGcAGCUGCaGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 10954 0.71 0.248487
Target:  5'- cGCCCGGCuugaCGUCGAgGUCGCacacaCCGCg -3'
miRNA:   3'- -UGGGCUGca--GCAGCUgCAGCG-----GGCGg -5'
12775 3' -60.3 NC_003387.1 + 24326 0.69 0.337652
Target:  5'- uGCUCGGCGaUCGUUuccuGCGUcagccacgaguugCGCCCGCCc -3'
miRNA:   3'- -UGGGCUGC-AGCAGc---UGCA-------------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 34550 0.69 0.335335
Target:  5'- -gCCGAuCGUCagcggGUCGACGUCGaacucgaugccaaCCGCCu -3'
miRNA:   3'- ugGGCU-GCAG-----CAGCUGCAGCg------------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 43300 0.69 0.330735
Target:  5'- cGCCCGcgucguacuCGUCGgcccacuccUCGGCGaucgucUUGCCCGCCu -3'
miRNA:   3'- -UGGGCu--------GCAGC---------AGCUGC------AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 14897 0.69 0.330735
Target:  5'- uGCCCGACcUCGcUCGGCccgaUCGCgCGCUg -3'
miRNA:   3'- -UGGGCUGcAGC-AGCUGc---AGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 52256 0.69 0.330735
Target:  5'- aGCUCG-CGcCgGUCGcCGUCGgCCGCCg -3'
miRNA:   3'- -UGGGCuGCaG-CAGCuGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 10781 0.69 0.329973
Target:  5'- gGCCUGcaucgucGgGUCGUCGGCGUCGgCgGCa -3'
miRNA:   3'- -UGGGC-------UgCAGCAGCUGCAGCgGgCGg -5'
12775 3' -60.3 NC_003387.1 + 17546 0.69 0.323172
Target:  5'- uAUCCGGuCGUacCGuUCGcGCGUCaGCCCGCCc -3'
miRNA:   3'- -UGGGCU-GCA--GC-AGC-UGCAG-CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 6893 0.69 0.323172
Target:  5'- uCCgCGGCGUCGUCG-CGg-GCCaucaGCCg -3'
miRNA:   3'- uGG-GCUGCAGCAGCuGCagCGGg---CGG- -5'
12775 3' -60.3 NC_003387.1 + 36662 0.69 0.322423
Target:  5'- uGCCCGACGaccUCG-CGGaucauguCGUCGCCagugaCGCCg -3'
miRNA:   3'- -UGGGCUGC---AGCaGCU-------GCAGCGG-----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 9024 0.69 0.322423
Target:  5'- cACCUGGCGggcgcCGUCGGCGauccacgccaggaUCGCgUCGCCc -3'
miRNA:   3'- -UGGGCUGCa----GCAGCUGC-------------AGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 9998 0.69 0.315739
Target:  5'- cGCCCuGACGagcagGUCGGCGUUGCCgGUa -3'
miRNA:   3'- -UGGG-CUGCag---CAGCUGCAGCGGgCGg -5'
12775 3' -60.3 NC_003387.1 + 8123 0.69 0.315739
Target:  5'- gGCCCGACGgCGUCGcuCGacuccuugaggaUCGCCUuGCCc -3'
miRNA:   3'- -UGGGCUGCaGCAGCu-GC------------AGCGGG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 5980 0.71 0.267326
Target:  5'- gACCCGGCcgGUUGcCGcCGugcaucguccacUCGCCCGCCu -3'
miRNA:   3'- -UGGGCUG--CAGCaGCuGC------------AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 23329 0.71 0.260921
Target:  5'- cGCCCGGCGggCGagaUCGAgGUCGUCaccggCGCCg -3'
miRNA:   3'- -UGGGCUGCa-GC---AGCUgCAGCGG-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.