miRNA display CGI


Results 41 - 60 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 36147 0.66 0.50757
Target:  5'- uCCCGGCGUUGcCGcCGUUGCgCaCCu -3'
miRNA:   3'- uGGGCUGCAGCaGCuGCAGCGgGcGG- -5'
12775 3' -60.3 NC_003387.1 + 45598 0.66 0.50757
Target:  5'- uACCCGACGaCGagauccguugccUCGGCGagcaGCUCGCUu -3'
miRNA:   3'- -UGGGCUGCaGC------------AGCUGCag--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35318 0.66 0.50757
Target:  5'- aGCCUGACGgCGUCGcCGgUCGCgggaauuuCgGCCa -3'
miRNA:   3'- -UGGGCUGCaGCAGCuGC-AGCG--------GgCGG- -5'
12775 3' -60.3 NC_003387.1 + 34145 0.66 0.515516
Target:  5'- aACUCGACGagcaccagGGCGUCGCCCucgGCCu -3'
miRNA:   3'- -UGGGCUGCagcag---CUGCAGCGGG---CGG- -5'
12775 3' -60.3 NC_003387.1 + 1296 0.66 0.517511
Target:  5'- -aCCGGCGcaguUCGaggCGGCGccgcaggCGCUCGCCg -3'
miRNA:   3'- ugGGCUGC----AGCa--GCUGCa------GCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 44023 0.66 0.478259
Target:  5'- --gCGGC-UCGUCGACGUCGgUCGgCa -3'
miRNA:   3'- uggGCUGcAGCAGCUGCAGCgGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 35999 0.66 0.478259
Target:  5'- gACUCGGCGUCGUCGccgaucacgAgGUCGaaCGUCu -3'
miRNA:   3'- -UGGGCUGCAGCAGC---------UgCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17463 0.67 0.42231
Target:  5'- uACCCGcggcgccaguUGUCGUCGGCGUacuugcgggCGCCgCgGCCg -3'
miRNA:   3'- -UGGGCu---------GCAGCAGCUGCA---------GCGG-G-CGG- -5'
12775 3' -60.3 NC_003387.1 + 32879 0.67 0.42231
Target:  5'- cGCgUCGGCGUCGUCGAgagauUGauUCGaCCCGCg -3'
miRNA:   3'- -UG-GGCUGCAGCAGCU-----GC--AGC-GGGCGg -5'
12775 3' -60.3 NC_003387.1 + 22517 0.67 0.431364
Target:  5'- cGCUCGACGUCGgcguaccggcUCGGCGacugcuccUUGCCCGa- -3'
miRNA:   3'- -UGGGCUGCAGC----------AGCUGC--------AGCGGGCgg -5'
12775 3' -60.3 NC_003387.1 + 33733 0.67 0.431364
Target:  5'- gGCCC-ACGccgccagcUCGUCGAUGcUCGCCggggUGCCg -3'
miRNA:   3'- -UGGGcUGC--------AGCAGCUGC-AGCGG----GCGG- -5'
12775 3' -60.3 NC_003387.1 + 37115 0.67 0.431364
Target:  5'- aACCCGuuGUCG-CGAuaaugguccgagUGUUGCCCGgCa -3'
miRNA:   3'- -UGGGCugCAGCaGCU------------GCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 42646 0.67 0.44053
Target:  5'- -gCCGAcCGUCGUCcugGUCGC-CGCCg -3'
miRNA:   3'- ugGGCU-GCAGCAGcugCAGCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 17740 0.67 0.449806
Target:  5'- aACCCGGC-UUGcCGACGggcaccagGCCCGCg -3'
miRNA:   3'- -UGGGCUGcAGCaGCUGCag------CGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 46058 0.67 0.459188
Target:  5'- cACCuCGAuCGccgCGUCGGCGUC-CCaugCGCCg -3'
miRNA:   3'- -UGG-GCU-GCa--GCAGCUGCAGcGG---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 15836 0.66 0.467721
Target:  5'- gACgCCGACGcggugccCGUCGGCGagcacaaUCGUCUGCUg -3'
miRNA:   3'- -UG-GGCUGCa------GCAGCUGC-------AGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 15009 0.66 0.468674
Target:  5'- cCUCGGCuuGUCGcgcgggUCGGCGUCGUCCGaCa -3'
miRNA:   3'- uGGGCUG--CAGC------AGCUGCAGCGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 12320 0.66 0.468674
Target:  5'- -gCCGACGUagGUC-ACGUgcaGCUCGCCg -3'
miRNA:   3'- ugGGCUGCAg-CAGcUGCAg--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 43371 0.66 0.468674
Target:  5'- -aCCGGC-UCGUCGACGUCcugguGCUCGaCg -3'
miRNA:   3'- ugGGCUGcAGCAGCUGCAG-----CGGGCgG- -5'
12775 3' -60.3 NC_003387.1 + 17008 0.66 0.475373
Target:  5'- aGCUCGGucagcggcaggcCGUCGUCGcCGUacggcccccacacgUGCCCGCUc -3'
miRNA:   3'- -UGGGCU------------GCAGCAGCuGCA--------------GCGGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.