miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 3' -60.3 NC_003387.1 + 4926 0.68 0.377976
Target:  5'- uGCCCGGCGcggCGUCGcGCGUUGUcgaacgugacagaCCaGCCg -3'
miRNA:   3'- -UGGGCUGCa--GCAGC-UGCAGCG-------------GG-CGG- -5'
12775 3' -60.3 NC_003387.1 + 48153 0.68 0.370483
Target:  5'- gGCCuCGGCGagcagcUUGUCGGCcuugucguaGUCGCCCGUUu -3'
miRNA:   3'- -UGG-GCUGC------AGCAGCUG---------CAGCGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 11056 0.68 0.367186
Target:  5'- gACgCCGAaccacaggucgcaGUCGUCGACGUacCGCagCGCCu -3'
miRNA:   3'- -UG-GGCUg------------CAGCAGCUGCA--GCGg-GCGG- -5'
12775 3' -60.3 NC_003387.1 + 14195 0.68 0.362278
Target:  5'- cACCaUGACGcCGUCGGCGcUCaCuuGCCg -3'
miRNA:   3'- -UGG-GCUGCaGCAGCUGC-AGcGggCGG- -5'
12775 3' -60.3 NC_003387.1 + 48031 0.68 0.362278
Target:  5'- uGCUCGACGagguucagcaccUCGUcuugcuuggCGGCGUCGgCCGCUu -3'
miRNA:   3'- -UGGGCUGC------------AGCA---------GCUGCAGCgGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 23039 0.69 0.346249
Target:  5'- gACCuCGGCcaCGUCGACGUCGa-CGUCg -3'
miRNA:   3'- -UGG-GCUGcaGCAGCUGCAGCggGCGG- -5'
12775 3' -60.3 NC_003387.1 + 22993 0.69 0.346249
Target:  5'- cGCCCGcguagcugcCGUCGUCGGCcuggGCgCCGCCg -3'
miRNA:   3'- -UGGGCu--------GCAGCAGCUGcag-CG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 16725 0.68 0.38727
Target:  5'- gACCuCGcCGUCGaUCGugcccuCGUCGUcgCCGCCg -3'
miRNA:   3'- -UGG-GCuGCAGC-AGCu-----GCAGCG--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 1447 0.68 0.39585
Target:  5'- gGCUCGGgGUCGUCGuccuCGUCGaggUCGUCg -3'
miRNA:   3'- -UGGGCUgCAGCAGCu---GCAGCg--GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 12610 0.68 0.39585
Target:  5'- uGCCCGACGcCGg-GcCGcCGCCUGCg -3'
miRNA:   3'- -UGGGCUGCaGCagCuGCaGCGGGCGg -5'
12775 3' -60.3 NC_003387.1 + 32879 0.67 0.42231
Target:  5'- cGCgUCGGCGUCGUCGAgagauUGauUCGaCCCGCg -3'
miRNA:   3'- -UG-GGCUGCAGCAGCU-----GC--AGC-GGGCGg -5'
12775 3' -60.3 NC_003387.1 + 17463 0.67 0.42231
Target:  5'- uACCCGcggcgccaguUGUCGUCGGCGUacuugcgggCGCCgCgGCCg -3'
miRNA:   3'- -UGGGCu---------GCAGCAGCUGCA---------GCGG-G-CGG- -5'
12775 3' -60.3 NC_003387.1 + 6690 0.67 0.413372
Target:  5'- cCUCGACGaCGcUCGGCGUCuuGCaCCGCg -3'
miRNA:   3'- uGGGCUGCaGC-AGCUGCAG--CG-GGCGg -5'
12775 3' -60.3 NC_003387.1 + 34497 0.68 0.404551
Target:  5'- aACCCGcgggcgaccAgGUCGcCGGuCGUCGCgUCGCCg -3'
miRNA:   3'- -UGGGC---------UgCAGCaGCU-GCAGCG-GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 31467 0.68 0.404551
Target:  5'- uGCCCGACuccUCGUCG-CGgCGCaccaUGCCg -3'
miRNA:   3'- -UGGGCUGc--AGCAGCuGCaGCGg---GCGG- -5'
12775 3' -60.3 NC_003387.1 + 48709 0.68 0.404551
Target:  5'- cGCuuGGCGUUGUCGAgcacCGUgCGCCg -3'
miRNA:   3'- -UGggCUGCAGCAGCUgca-GCGgGCGG- -5'
12775 3' -60.3 NC_003387.1 + 35216 0.68 0.403676
Target:  5'- -aCCGccuCGUCGUCGAUcauuuccauaGUCGCggccaugCCGCCg -3'
miRNA:   3'- ugGGCu--GCAGCAGCUG----------CAGCG-------GGCGG- -5'
12775 3' -60.3 NC_003387.1 + 3067 0.68 0.39585
Target:  5'- cGCuCCGACGUCGacccacUCGGgGccaaGCUCGCCg -3'
miRNA:   3'- -UG-GGCUGCAGC------AGCUgCag--CGGGCGG- -5'
12775 3' -60.3 NC_003387.1 + 27144 0.68 0.39585
Target:  5'- uGCCCGcCGggGUCGGCGcCGCCggggaacgugUGCCc -3'
miRNA:   3'- -UGGGCuGCagCAGCUGCaGCGG----------GCGG- -5'
12775 3' -60.3 NC_003387.1 + 21532 0.69 0.338428
Target:  5'- gGCgCG-CGUCGcguUCGACGUgcCGCCCGgCa -3'
miRNA:   3'- -UGgGCuGCAGC---AGCUGCA--GCGGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.