Results 121 - 140 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12775 | 3' | -60.3 | NC_003387.1 | + | 11420 | 0.69 | 0.330735 |
Target: 5'- cCCCGAggugcUGUCGUCGGugcuCGU-GCCCGCg -3' miRNA: 3'- uGGGCU-----GCAGCAGCU----GCAgCGGGCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 29384 | 0.7 | 0.280516 |
Target: 5'- cGCCggUGACGaCcUCGAUcUCGCCCGCCg -3' miRNA: 3'- -UGG--GCUGCaGcAGCUGcAGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 51217 | 0.7 | 0.276506 |
Target: 5'- aGCCUGcACGUCGgccgcggccuggugcUCGACGUCGa-CGCCc -3' miRNA: 3'- -UGGGC-UGCAGC---------------AGCUGCAGCggGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 1304 | 0.74 | 0.156286 |
Target: 5'- cGCCCuggcgggcGACGUCGaCGACGUCGgguacgucgagauuUCCGCCg -3' miRNA: 3'- -UGGG--------CUGCAGCaGCUGCAGC--------------GGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 35806 | 0.74 | 0.165902 |
Target: 5'- uGCCuCGGCGcCGUCGGCG-CGaugcucucguacCCCGCCa -3' miRNA: 3'- -UGG-GCUGCaGCAGCUGCaGC------------GGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 37287 | 0.73 | 0.174693 |
Target: 5'- cGCCUGGCGcgcUCGUCGGCGcggucgUCGaCCgCGCCg -3' miRNA: 3'- -UGGGCUGC---AGCAGCUGC------AGC-GG-GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 18321 | 0.73 | 0.183896 |
Target: 5'- cGCCCGGCaacggCGUgGcCGUCguGCCCGCCg -3' miRNA: 3'- -UGGGCUGca---GCAgCuGCAG--CGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 28475 | 0.73 | 0.198502 |
Target: 5'- cCCCGAgGUCaagcUCGACGUCGUCgGCg -3' miRNA: 3'- uGGGCUgCAGc---AGCUGCAGCGGgCGg -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 33080 | 0.72 | 0.203591 |
Target: 5'- cGCCgCGAgCGUaacCG-CGUCGCCCGCCg -3' miRNA: 3'- -UGG-GCU-GCAgcaGCuGCAGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 37111 | 0.72 | 0.230759 |
Target: 5'- cCUCGACGUgcUCGACGUCGgCCggGCCg -3' miRNA: 3'- uGGGCUGCAgcAGCUGCAGCgGG--CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 51508 | 0.71 | 0.234798 |
Target: 5'- aGCUCGACGagccaugcccCGUCGACGgccacccuugccccUgCGCCCGCCg -3' miRNA: 3'- -UGGGCUGCa---------GCAGCUGC--------------A-GCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 13639 | 0.71 | 0.242455 |
Target: 5'- aACCCGGCcacCGUCGGCGgcggcUCGgUCGCCg -3' miRNA: 3'- -UGGGCUGca-GCAGCUGC-----AGCgGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 41696 | 0.71 | 0.242455 |
Target: 5'- gACCCGGCGUCG-CGGCGcCGacgaaggCgGCCg -3' miRNA: 3'- -UGGGCUGCAGCaGCUGCaGCg------GgCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 24634 | 0.71 | 0.249097 |
Target: 5'- gACCCGACGcaccucgcccugcugCG-CGAgGUCGCCagCGCCg -3' miRNA: 3'- -UGGGCUGCa--------------GCaGCUgCAGCGG--GCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 7819 | 0.71 | 0.254642 |
Target: 5'- cGCCUGGCGgc--CGAgGUCGCCCGgCg -3' miRNA: 3'- -UGGGCUGCagcaGCUgCAGCGGGCgG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 29678 | 0.71 | 0.254642 |
Target: 5'- -gCCGACGUCGacgUCGACGUgGCCgagGUCg -3' miRNA: 3'- ugGGCUGCAGC---AGCUGCAgCGGg--CGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 44733 | 0.71 | 0.254642 |
Target: 5'- cGCCCGGcCGgggCGcCGAagcgcagcaCGcCGCCCGCCg -3' miRNA: 3'- -UGGGCU-GCa--GCaGCU---------GCaGCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 25268 | 0.71 | 0.254642 |
Target: 5'- -gCCGACGUCGcgCGuGCGcUCGaCCCGUCg -3' miRNA: 3'- ugGGCUGCAGCa-GC-UGC-AGC-GGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 3734 | 0.71 | 0.256512 |
Target: 5'- gACCCGuaccugucgGCGUCGUCcaagcugacgacgcaGugGUacgccgagcagccCGCCCGCCa -3' miRNA: 3'- -UGGGC---------UGCAGCAG---------------CugCA-------------GCGGGCGG- -5' |
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12775 | 3' | -60.3 | NC_003387.1 | + | 49501 | 0.71 | 0.260921 |
Target: 5'- cGCCCGGCGUCGacgugUCgcaauggggcugGACGUCGCa-GCCc -3' miRNA: 3'- -UGGGCUGCAGC-----AG------------CUGCAGCGggCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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