Results 61 - 80 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12775 | 5' | -55.1 | NC_003387.1 | + | 30976 | 0.68 | 0.580797 |
Target: 5'- -uGGCGCugaCGCC--GAGCGCCUCGg -3' miRNA: 3'- cuCCGCGua-GUGGcaCUUGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 44089 | 0.68 | 0.569865 |
Target: 5'- cGAGGUcagacgGCGagGCCGcGAACACCUUGg -3' miRNA: 3'- -CUCCG------CGUagUGGCaCUUGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 5774 | 0.68 | 0.558983 |
Target: 5'- -cGGcCGCGcUCGCCGcgGAucgACACCUCGg -3' miRNA: 3'- cuCC-GCGU-AGUGGCa-CU---UGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 11468 | 0.68 | 0.602783 |
Target: 5'- cGGGGCGCucaaguucAUgGCCGacAAUGCCUCGUg -3' miRNA: 3'- -CUCCGCG--------UAgUGGCacUUGUGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 42011 | 0.69 | 0.537405 |
Target: 5'- uGGGGcCGCcUgGCCGUGAugguCGCCgagCGCc -3' miRNA: 3'- -CUCC-GCGuAgUGGCACUu---GUGGa--GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 41788 | 0.69 | 0.548161 |
Target: 5'- cGGGCGCGU-GCCGcGAccuggcgcACGCCUgGCa -3' miRNA: 3'- cUCCGCGUAgUGGCaCU--------UGUGGAgCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 50557 | 0.69 | 0.548161 |
Target: 5'- gGGGGCGC-UUugUGUuGACACCUCa- -3' miRNA: 3'- -CUCCGCGuAGugGCAcUUGUGGAGcg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 36087 | 0.69 | 0.548161 |
Target: 5'- cGAGGCGCA-CGCCGagugcaUGAGCAUgUC-Cg -3' miRNA: 3'- -CUCCGCGUaGUGGC------ACUUGUGgAGcG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 21829 | 0.69 | 0.516122 |
Target: 5'- uGGGaGCGCAagCGCagcguGUGGACACCggCGCa -3' miRNA: 3'- -CUC-CGCGUa-GUGg----CACUUGUGGa-GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 4525 | 0.69 | 0.548161 |
Target: 5'- -cGGcCGCcgcCGCCGgugcGGGCACCUUGCg -3' miRNA: 3'- cuCC-GCGua-GUGGCa---CUUGUGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 51728 | 0.69 | 0.537405 |
Target: 5'- --aGCGCAUCcgaccCCGgucGAGCGCCUCGg -3' miRNA: 3'- cucCGCGUAGu----GGCa--CUUGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 13337 | 0.69 | 0.526724 |
Target: 5'- cAGGCGCAcgagCACCucguACACCUCGg -3' miRNA: 3'- cUCCGCGUa---GUGGcacuUGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 12774 | 0.69 | 0.548161 |
Target: 5'- --cGCGCucguacucgAUCGCCGcaaUGcGCGCCUCGCa -3' miRNA: 3'- cucCGCG---------UAGUGGC---ACuUGUGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 14692 | 0.69 | 0.536334 |
Target: 5'- cGGGGCGcCGUCGCCGcGAuccguugcggugcACGgCUUGCu -3' miRNA: 3'- -CUCCGC-GUAGUGGCaCU-------------UGUgGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 48410 | 0.69 | 0.534193 |
Target: 5'- -cGGCGUugagccacugccggGUCGCgGUGcGCugCUCGCc -3' miRNA: 3'- cuCCGCG--------------UAGUGgCACuUGugGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 43786 | 0.69 | 0.526724 |
Target: 5'- cGGGCGCcgugCAUCGcGGugGCCUCGg -3' miRNA: 3'- cUCCGCGua--GUGGCaCUugUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 25209 | 0.69 | 0.505608 |
Target: 5'- --aGCGCAUCAUgGUGcugacguuuagcGGCACCUCGg -3' miRNA: 3'- cucCGCGUAGUGgCAC------------UUGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 44281 | 0.69 | 0.505608 |
Target: 5'- --cGCGCGguggcUCGCCGUGucucucgauUACCUCGCg -3' miRNA: 3'- cucCGCGU-----AGUGGCACuu-------GUGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 14044 | 0.69 | 0.516122 |
Target: 5'- -cGGCGCAcccgcacuuUCAgCGgaUGGGCGCCUgGCa -3' miRNA: 3'- cuCCGCGU---------AGUgGC--ACUUGUGGAgCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 21748 | 0.69 | 0.52566 |
Target: 5'- cGAGGCGC-UCGgCGUcAGCGCCaccgacgcgcuguUCGCg -3' miRNA: 3'- -CUCCGCGuAGUgGCAcUUGUGG-------------AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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