Results 81 - 100 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12775 | 5' | -55.1 | NC_003387.1 | + | 48678 | 0.7 | 0.454539 |
Target: 5'- cGAGGCGUAUCgcacccACCGcacGC-CCUCGCg -3' miRNA: 3'- -CUCCGCGUAG------UGGCacuUGuGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 8612 | 0.7 | 0.484864 |
Target: 5'- uGGGGCGaCGUUACCaagGUGuucGCGgCCUCGCc -3' miRNA: 3'- -CUCCGC-GUAGUGG---CACu--UGU-GGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 46002 | 0.7 | 0.454539 |
Target: 5'- cGGGGCGaGUCgACgGUGAACugCcCGCg -3' miRNA: 3'- -CUCCGCgUAG-UGgCACUUGugGaGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 32049 | 0.7 | 0.495187 |
Target: 5'- cGGGuCGCAagucugUCGCCGccGAGCGCCcguUCGCg -3' miRNA: 3'- cUCC-GCGU------AGUGGCa-CUUGUGG---AGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 2467 | 0.7 | 0.44466 |
Target: 5'- cGAGGUGCAcCGCCcggcgcUGAcguacgGCGCCUCGUa -3' miRNA: 3'- -CUCCGCGUaGUGGc-----ACU------UGUGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 1617 | 0.7 | 0.474646 |
Target: 5'- cGGGCGCG----UGUGGGCAgCCUCGCg -3' miRNA: 3'- cUCCGCGUagugGCACUUGU-GGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 7346 | 0.7 | 0.495187 |
Target: 5'- cGGGCGCAgcuaacCGCCGgcaaaaacucGAGCGCgUCGCc -3' miRNA: 3'- cUCCGCGUa-----GUGGCa---------CUUGUGgAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 19506 | 0.71 | 0.434903 |
Target: 5'- -cGGC-CAUCGCCGaGcGgGCCUCGCg -3' miRNA: 3'- cuCCGcGUAGUGGCaCuUgUGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 23832 | 0.71 | 0.397155 |
Target: 5'- aGGGCGCcgCGCCGgGAcucgGCGCCgugcCGCu -3' miRNA: 3'- cUCCGCGuaGUGGCaCU----UGUGGa---GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 37537 | 0.71 | 0.415767 |
Target: 5'- cGGGCGCGggccUCcUCGUcGAuCACCUCGCg -3' miRNA: 3'- cUCCGCGU----AGuGGCA-CUuGUGGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 1163 | 0.71 | 0.425271 |
Target: 5'- cGAGGCGCAgauccUCACCGaGAACGCgaUGg -3' miRNA: 3'- -CUCCGCGU-----AGUGGCaCUUGUGgaGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 7797 | 0.71 | 0.415767 |
Target: 5'- cGAGGUGCAg-GCCGagcUGcAACGCCUgGCg -3' miRNA: 3'- -CUCCGCGUagUGGC---AC-UUGUGGAgCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 50243 | 0.72 | 0.379088 |
Target: 5'- cGAGGCGCcguacgucagCGCCGggcgGuGCACCUCGg -3' miRNA: 3'- -CUCCGCGua--------GUGGCa---CuUGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 4667 | 0.72 | 0.370263 |
Target: 5'- cGGGGCGCGguaGCgGgUGAACugCUUGCc -3' miRNA: 3'- -CUCCGCGUag-UGgC-ACUUGugGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 19458 | 0.72 | 0.36158 |
Target: 5'- cGGGCGCguGUCAgUGUGGGCGCCgaggccacCGCg -3' miRNA: 3'- cUCCGCG--UAGUgGCACUUGUGGa-------GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 33654 | 0.72 | 0.379088 |
Target: 5'- cAGG-GCAUCACCGUG-GC-CCUgGCg -3' miRNA: 3'- cUCCgCGUAGUGGCACuUGuGGAgCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 18106 | 0.73 | 0.33639 |
Target: 5'- cGAGGCGCAggaUUAUgCGUGGACGCCguaCGUc -3' miRNA: 3'- -CUCCGCGU---AGUG-GCACUUGUGGa--GCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 26809 | 0.73 | 0.33639 |
Target: 5'- uGGGGCGCcguauUCGCCGUGuuuGGCAUCUUGg -3' miRNA: 3'- -CUCCGCGu----AGUGGCAC---UUGUGGAGCg -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 30768 | 0.73 | 0.312504 |
Target: 5'- cGGGCGUG--ACCGUGuACugCUCGCg -3' miRNA: 3'- cUCCGCGUagUGGCACuUGugGAGCG- -5' |
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12775 | 5' | -55.1 | NC_003387.1 | + | 1321 | 0.73 | 0.328283 |
Target: 5'- cAGGCGCucgccgGUCACCGgccGAAUccgaaaucgGCCUCGCu -3' miRNA: 3'- cUCCGCG------UAGUGGCa--CUUG---------UGGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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