miRNA display CGI


Results 101 - 111 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 42206 0.73 0.312504
Target:  5'- -cGGCccGCAUCGCCGagccGAGCGCCcCGCu -3'
miRNA:   3'- cuCCG--CGUAGUGGCa---CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 1321 0.73 0.328283
Target:  5'- cAGGCGCucgccgGUCACCGgccGAAUccgaaaucgGCCUCGCu -3'
miRNA:   3'- cUCCGCG------UAGUGGCa--CUUG---------UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 20177 0.74 0.297308
Target:  5'- aGGGCGCGguugaugCGCUGcu-GCGCCUCGCa -3'
miRNA:   3'- cUCCGCGUa------GUGGCacuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8999 0.74 0.297308
Target:  5'- cGGGCucccGCAUgcCGCCGUcGAGCACCUgGCg -3'
miRNA:   3'- cUCCG----CGUA--GUGGCA-CUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 29647 0.74 0.26865
Target:  5'- -cGGCGCGaguaACCGgcugcucGAACGCCUCGCc -3'
miRNA:   3'- cuCCGCGUag--UGGCa------CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 1277 0.74 0.275599
Target:  5'- cGAGGUGU-UCACgGUGAuGCGCCUCGa -3'
miRNA:   3'- -CUCCGCGuAGUGgCACU-UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 27311 0.74 0.289928
Target:  5'- aGAGcCGCGUCGCCGUGAuCGCCgCGa -3'
miRNA:   3'- -CUCcGCGUAGUGGCACUuGUGGaGCg -5'
12775 5' -55.1 NC_003387.1 + 13421 0.74 0.289928
Target:  5'- -cGGCGC-UCGCCGgugUGAACuACCUCGg -3'
miRNA:   3'- cuCCGCGuAGUGGC---ACUUG-UGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 34519 0.76 0.223917
Target:  5'- -cGGUcgucGCGUCGCCGagGcGCACCUCGCa -3'
miRNA:   3'- cuCCG----CGUAGUGGCa-CuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 25324 0.78 0.148713
Target:  5'- cAGcGCGCGUCguacacagagaacGCCGUGAACGCC-CGCa -3'
miRNA:   3'- cUC-CGCGUAG-------------UGGCACUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 51444 1.11 0.000721
Target:  5'- cGAGGCGCAUCACCGUGAACACCUCGCc -3'
miRNA:   3'- -CUCCGCGUAGUGGCACUUGUGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.