miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 21829 0.69 0.516122
Target:  5'- uGGGaGCGCAagCGCagcguGUGGACACCggCGCa -3'
miRNA:   3'- -CUC-CGCGUa-GUGg----CACUUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 13337 0.69 0.526724
Target:  5'- cAGGCGCAcgagCACCucguACACCUCGg -3'
miRNA:   3'- cUCCGCGUa---GUGGcacuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 43786 0.69 0.526724
Target:  5'- cGGGCGCcgugCAUCGcGGugGCCUCGg -3'
miRNA:   3'- cUCCGCGua--GUGGCaCUugUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 48410 0.69 0.534193
Target:  5'- -cGGCGUugagccacugccggGUCGCgGUGcGCugCUCGCc -3'
miRNA:   3'- cuCCGCG--------------UAGUGgCACuUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14692 0.69 0.536334
Target:  5'- cGGGGCGcCGUCGCCGcGAuccguugcggugcACGgCUUGCu -3'
miRNA:   3'- -CUCCGC-GUAGUGGCaCU-------------UGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 12774 0.69 0.548161
Target:  5'- --cGCGCucguacucgAUCGCCGcaaUGcGCGCCUCGCa -3'
miRNA:   3'- cucCGCG---------UAGUGGC---ACuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 21748 0.69 0.52566
Target:  5'- cGAGGCGC-UCGgCGUcAGCGCCaccgacgcgcuguUCGCg -3'
miRNA:   3'- -CUCCGCGuAGUgGCAcUUGUGG-------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 11958 0.68 0.613818
Target:  5'- cGAGGCGCAccUCGgUGUaucGACGCC-CGCc -3'
miRNA:   3'- -CUCCGCGU--AGUgGCAc--UUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 5774 0.68 0.558983
Target:  5'- -cGGcCGCGcUCGCCGcgGAucgACACCUCGg -3'
miRNA:   3'- cuCC-GCGU-AGUGGCa-CU---UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 30976 0.68 0.580797
Target:  5'- -uGGCGCugaCGCC--GAGCGCCUCGg -3'
miRNA:   3'- cuCCGCGua-GUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44421 0.68 0.580797
Target:  5'- uGAuGCGCcgCGCCgGUGAuccACACgUCGCc -3'
miRNA:   3'- -CUcCGCGuaGUGG-CACU---UGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 36162 0.68 0.602783
Target:  5'- cGuuGCGCAccugCACCuUGAACGCCUgGUa -3'
miRNA:   3'- -CucCGCGUa---GUGGcACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 35852 0.68 0.60168
Target:  5'- --cGUGCAUCGCC-UGGGCGugcggcgccaucuCCUCGCg -3'
miRNA:   3'- cucCGCGUAGUGGcACUUGU-------------GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 6211 0.68 0.602783
Target:  5'- -uGGUGCAgUCGCCGagcgagcugcgGAACACCugaacUCGCa -3'
miRNA:   3'- cuCCGCGU-AGUGGCa----------CUUGUGG-----AGCG- -5'
12775 5' -55.1 NC_003387.1 + 38915 0.68 0.602783
Target:  5'- cGGGCGUuugcUCGCUGUGGAuCugCgagCGCa -3'
miRNA:   3'- cUCCGCGu---AGUGGCACUU-GugGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 9612 0.68 0.602783
Target:  5'- -cGGCGCcgCGCCGU---CGCgCUCGUa -3'
miRNA:   3'- cuCCGCGuaGUGGCAcuuGUG-GAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48288 0.68 0.602783
Target:  5'- -cGGCGCGg-GCuCGgcGAACGCCUUGCc -3'
miRNA:   3'- cuCCGCGUagUG-GCa-CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7847 0.68 0.613818
Target:  5'- -cGGCuGCGUCAgcUCGgccAGCACCUUGCg -3'
miRNA:   3'- cuCCG-CGUAGU--GGCac-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 16714 0.68 0.613818
Target:  5'- -cGGCGCAccacgaccUCGCCGUcGAucguGC-CCUCGUc -3'
miRNA:   3'- cuCCGCGU--------AGUGGCA-CU----UGuGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 44089 0.68 0.569865
Target:  5'- cGAGGUcagacgGCGagGCCGcGAACACCUUGg -3'
miRNA:   3'- -CUCCG------CGUagUGGCaCUUGUGGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.