miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 5774 0.68 0.558983
Target:  5'- -cGGcCGCGcUCGCCGcgGAucgACACCUCGg -3'
miRNA:   3'- cuCC-GCGU-AGUGGCa-CU---UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44089 0.68 0.569865
Target:  5'- cGAGGUcagacgGCGagGCCGcGAACACCUUGg -3'
miRNA:   3'- -CUCCG------CGUagUGGCaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 30976 0.68 0.580797
Target:  5'- -uGGCGCugaCGCC--GAGCGCCUCGg -3'
miRNA:   3'- cuCCGCGua-GUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44421 0.68 0.580797
Target:  5'- uGAuGCGCcgCGCCgGUGAuccACACgUCGCc -3'
miRNA:   3'- -CUcCGCGuaGUGG-CACU---UGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 35852 0.68 0.60168
Target:  5'- --cGUGCAUCGCC-UGGGCGugcggcgccaucuCCUCGCg -3'
miRNA:   3'- cucCGCGUAGUGGcACUUGU-------------GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 36162 0.68 0.602783
Target:  5'- cGuuGCGCAccugCACCuUGAACGCCUgGUa -3'
miRNA:   3'- -CucCGCGUa---GUGGcACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 6211 0.68 0.602783
Target:  5'- -uGGUGCAgUCGCCGagcgagcugcgGAACACCugaacUCGCa -3'
miRNA:   3'- cuCCGCGU-AGUGGCa----------CUUGUGG-----AGCG- -5'
12775 5' -55.1 NC_003387.1 + 38915 0.68 0.602783
Target:  5'- cGGGCGUuugcUCGCUGUGGAuCugCgagCGCa -3'
miRNA:   3'- cUCCGCGu---AGUGGCACUU-GugGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 7847 0.68 0.613818
Target:  5'- -cGGCuGCGUCAgcUCGgccAGCACCUUGCg -3'
miRNA:   3'- cuCCG-CGUAGU--GGCac-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48288 0.68 0.602783
Target:  5'- -cGGCGCGg-GCuCGgcGAACGCCUUGCc -3'
miRNA:   3'- cuCCGCGUagUG-GCa-CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 2348 0.67 0.62487
Target:  5'- cGAGGcCGcCGUCGgCGUcGAGCGCCaCGUa -3'
miRNA:   3'- -CUCC-GC-GUAGUgGCA-CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 23019 0.67 0.62487
Target:  5'- uGGGCGC--CGCC--GAGCGCCUCGa -3'
miRNA:   3'- cUCCGCGuaGUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 10510 0.67 0.635927
Target:  5'- -cGGUGCgccgGUCGCCGUc--CugCUCGCg -3'
miRNA:   3'- cuCCGCG----UAGUGGCAcuuGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14872 0.67 0.646982
Target:  5'- cGAGGCGagcCGCCGggcgcagGggUgcccgACCUCGCu -3'
miRNA:   3'- -CUCCGCguaGUGGCa------CuuG-----UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8713 0.67 0.646982
Target:  5'- uGAGGUGCuGUCACCGU---UugCUgGCa -3'
miRNA:   3'- -CUCCGCG-UAGUGGCAcuuGugGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 8249 0.67 0.669039
Target:  5'- -cGGUcaccCGUCACgcgggCGUGcAGCGCCUCGCg -3'
miRNA:   3'- cuCCGc---GUAGUG-----GCAC-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 34604 0.67 0.62487
Target:  5'- cGAGGCgGCAuUCACCGgcaUGGcCGCCUaccugCGCa -3'
miRNA:   3'- -CUCCG-CGU-AGUGGC---ACUuGUGGA-----GCG- -5'
12775 5' -55.1 NC_003387.1 + 51426 0.67 0.620448
Target:  5'- -cGGCGCcgccucgaacugCGCCGgucGAACGCCgCGCa -3'
miRNA:   3'- cuCCGCGua----------GUGGCa--CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 52029 0.67 0.669039
Target:  5'- -cGGCGCAaugaCGUGGcgcGCgACCUCGCu -3'
miRNA:   3'- cuCCGCGUagugGCACU---UG-UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 28118 0.67 0.635927
Target:  5'- uGAGGCGCugAUCGCCG---AgGCC-CGCa -3'
miRNA:   3'- -CUCCGCG--UAGUGGCacuUgUGGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.