miRNA display CGI


Results 81 - 100 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 40760 0.66 0.701835
Target:  5'- cGGGCGUcgaGUaCACCGagGuGCGCCUCGa -3'
miRNA:   3'- cUCCGCG---UA-GUGGCa-CuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 41086 0.68 0.613818
Target:  5'- cGAGGgGCgAUCgugaGCCGcGAGCugCUgGCg -3'
miRNA:   3'- -CUCCgCG-UAG----UGGCaCUUGugGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 41406 0.67 0.65692
Target:  5'- cGAGGCGCAgcacgagUCGCUGUucGAGCuacccgaggucACCggCGCg -3'
miRNA:   3'- -CUCCGCGU-------AGUGGCA--CUUG-----------UGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 41788 0.69 0.548161
Target:  5'- cGGGCGCGU-GCCGcGAccuggcgcACGCCUgGCa -3'
miRNA:   3'- cUCCGCGUAgUGGCaCU--------UGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 42011 0.69 0.537405
Target:  5'- uGGGGcCGCcUgGCCGUGAugguCGCCgagCGCc -3'
miRNA:   3'- -CUCC-GCGuAgUGGCACUu---GUGGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 42206 0.73 0.312504
Target:  5'- -cGGCccGCAUCGCCGagccGAGCGCCcCGCu -3'
miRNA:   3'- cuCCG--CGUAGUGGCa---CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 43691 0.68 0.591773
Target:  5'- -uGGCGUggAUCGCCGacGGCGCC-CGCc -3'
miRNA:   3'- cuCCGCG--UAGUGGCacUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 43786 0.69 0.526724
Target:  5'- cGGGCGCcgugCAUCGcGGugGCCUCGg -3'
miRNA:   3'- cUCCGCGua--GUGGCaCUugUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44089 0.68 0.569865
Target:  5'- cGAGGUcagacgGCGagGCCGcGAACACCUUGg -3'
miRNA:   3'- -CUCCG------CGUagUGGCaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44281 0.69 0.505608
Target:  5'- --cGCGCGguggcUCGCCGUGucucucgauUACCUCGCg -3'
miRNA:   3'- cucCGCGU-----AGUGGCACuu-------GUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 44421 0.68 0.580797
Target:  5'- uGAuGCGCcgCGCCgGUGAuccACACgUCGCc -3'
miRNA:   3'- -CUcCGCGuaGUGG-CACU---UGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 45144 0.66 0.722305
Target:  5'- cGAGGCGCggCGCucggagguggucgCGUGAgcagGCACCg-GCa -3'
miRNA:   3'- -CUCCGCGuaGUG-------------GCACU----UGUGGagCG- -5'
12775 5' -55.1 NC_003387.1 + 46002 0.7 0.454539
Target:  5'- cGGGGCGaGUCgACgGUGAACugCcCGCg -3'
miRNA:   3'- -CUCCGCgUAG-UGgCACUUGugGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 48288 0.68 0.602783
Target:  5'- -cGGCGCGg-GCuCGgcGAACGCCUUGCc -3'
miRNA:   3'- cuCCGCGUagUG-GCa-CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48410 0.69 0.534193
Target:  5'- -cGGCGUugagccacugccggGUCGCgGUGcGCugCUCGCc -3'
miRNA:   3'- cuCCGCG--------------UAGUGgCACuUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48678 0.7 0.454539
Target:  5'- cGAGGCGUAUCgcacccACCGcacGC-CCUCGCg -3'
miRNA:   3'- -CUCCGCGUAG------UGGCacuUGuGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48778 0.66 0.690956
Target:  5'- -cGGCGCAgccagcUCGCCGcUGAuCGCCgcgGCg -3'
miRNA:   3'- cuCCGCGU------AGUGGC-ACUuGUGGag-CG- -5'
12775 5' -55.1 NC_003387.1 + 49064 0.66 0.734012
Target:  5'- -uGGCGC-UCACCG-GGcaGgCUCGCg -3'
miRNA:   3'- cuCCGCGuAGUGGCaCUugUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 49093 0.68 0.580797
Target:  5'- cAGGCGUA-CGaaGUcGAGCACCUCGa -3'
miRNA:   3'- cUCCGCGUaGUggCA-CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 49574 0.66 0.701835
Target:  5'- cGAGGUGCGcccgCuGCCGggcGGugGCCUgGCa -3'
miRNA:   3'- -CUCCGCGUa---G-UGGCa--CUugUGGAgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.