miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 24210 0.68 0.613818
Target:  5'- -cGGCGCAccgCACCGgacGAAUugGCCUgaCGCg -3'
miRNA:   3'- cuCCGCGUa--GUGGCa--CUUG--UGGA--GCG- -5'
12775 5' -55.1 NC_003387.1 + 23832 0.71 0.397155
Target:  5'- aGGGCGCcgCGCCGgGAcucgGCGCCgugcCGCu -3'
miRNA:   3'- cUCCGCGuaGUGGCaCU----UGUGGa---GCG- -5'
12775 5' -55.1 NC_003387.1 + 23019 0.67 0.62487
Target:  5'- uGGGCGC--CGCC--GAGCGCCUCGa -3'
miRNA:   3'- cUCCGCGuaGUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 22965 0.66 0.735071
Target:  5'- uGGGGCGCcccgGUCAUCGUGucgggcGGCGCCgacgacggcaaggccCGCa -3'
miRNA:   3'- -CUCCGCG----UAGUGGCAC------UUGUGGa--------------GCG- -5'
12775 5' -55.1 NC_003387.1 + 22442 0.66 0.701835
Target:  5'- cAGGCGCGg-GCCGcGGcguugGCCUCGCg -3'
miRNA:   3'- cUCCGCGUagUGGCaCUug---UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 21829 0.69 0.516122
Target:  5'- uGGGaGCGCAagCGCagcguGUGGACACCggCGCa -3'
miRNA:   3'- -CUC-CGCGUa-GUGg----CACUUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 21748 0.69 0.52566
Target:  5'- cGAGGCGC-UCGgCGUcAGCGCCaccgacgcgcuguUCGCg -3'
miRNA:   3'- -CUCCGCGuAGUgGCAcUUGUGG-------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 20191 0.68 0.613818
Target:  5'- -cGGCGC--CGCCGUGAacuACGCaugCGCu -3'
miRNA:   3'- cuCCGCGuaGUGGCACU---UGUGga-GCG- -5'
12775 5' -55.1 NC_003387.1 + 20177 0.74 0.297308
Target:  5'- aGGGCGCGguugaugCGCUGcu-GCGCCUCGCa -3'
miRNA:   3'- cUCCGCGUa------GUGGCacuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 19506 0.71 0.434903
Target:  5'- -cGGC-CAUCGCCGaGcGgGCCUCGCg -3'
miRNA:   3'- cuCCGcGUAGUGGCaCuUgUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 19458 0.72 0.36158
Target:  5'- cGGGCGCguGUCAgUGUGGGCGCCgaggccacCGCg -3'
miRNA:   3'- cUCCGCG--UAGUgGCACUUGUGGa-------GCG- -5'
12775 5' -55.1 NC_003387.1 + 18870 0.66 0.723374
Target:  5'- cGAGGCGC-UCGUCGcGAGCAUCaUCGa -3'
miRNA:   3'- -CUCCGCGuAGUGGCaCUUGUGG-AGCg -5'
12775 5' -55.1 NC_003387.1 + 18721 0.66 0.680021
Target:  5'- aGGGCGCggCACuCGUcGAGCAgCgggcagCGCa -3'
miRNA:   3'- cUCCGCGuaGUG-GCA-CUUGUgGa-----GCG- -5'
12775 5' -55.1 NC_003387.1 + 18106 0.73 0.33639
Target:  5'- cGAGGCGCAggaUUAUgCGUGGACGCCguaCGUc -3'
miRNA:   3'- -CUCCGCGU---AGUG-GCACUUGUGGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 16714 0.68 0.613818
Target:  5'- -cGGCGCAccacgaccUCGCCGUcGAucguGC-CCUCGUc -3'
miRNA:   3'- cuCCGCGU--------AGUGGCA-CU----UGuGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 15809 0.66 0.701835
Target:  5'- cGGGGUGCcgcuGUCGCCGccgguUGuGACGCCgaCGCg -3'
miRNA:   3'- -CUCCGCG----UAGUGGC-----AC-UUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 15564 0.66 0.690956
Target:  5'- gGAGGUGCA--GCCGauucGCGCCUgGCu -3'
miRNA:   3'- -CUCCGCGUagUGGCacu-UGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 14872 0.67 0.646982
Target:  5'- cGAGGCGagcCGCCGggcgcagGggUgcccgACCUCGCu -3'
miRNA:   3'- -CUCCGCguaGUGGCa------CuuG-----UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14692 0.69 0.536334
Target:  5'- cGGGGCGcCGUCGCCGcGAuccguugcggugcACGgCUUGCu -3'
miRNA:   3'- -CUCCGC-GUAGUGGCaCU-------------UGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14044 0.69 0.516122
Target:  5'- -cGGCGCAcccgcacuuUCAgCGgaUGGGCGCCUgGCa -3'
miRNA:   3'- cuCCGCGU---------AGUgGC--ACUUGUGGAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.