miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 13421 0.74 0.289928
Target:  5'- -cGGCGC-UCGCCGgugUGAACuACCUCGg -3'
miRNA:   3'- cuCCGCGuAGUGGC---ACUUG-UGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 13337 0.69 0.526724
Target:  5'- cAGGCGCAcgagCACCucguACACCUCGg -3'
miRNA:   3'- cUCCGCGUa---GUGGcacuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 12774 0.69 0.548161
Target:  5'- --cGCGCucguacucgAUCGCCGcaaUGcGCGCCUCGCa -3'
miRNA:   3'- cucCGCG---------UAGUGGC---ACuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 11958 0.68 0.613818
Target:  5'- cGAGGCGCAccUCGgUGUaucGACGCC-CGCc -3'
miRNA:   3'- -CUCCGCGU--AGUgGCAc--UUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 11468 0.68 0.602783
Target:  5'- cGGGGCGCucaaguucAUgGCCGacAAUGCCUCGUg -3'
miRNA:   3'- -CUCCGCG--------UAgUGGCacUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 10724 0.66 0.723374
Target:  5'- cAGGCgGCccCACCGcuUGAGCACCgcgGCg -3'
miRNA:   3'- cUCCG-CGuaGUGGC--ACUUGUGGag-CG- -5'
12775 5' -55.1 NC_003387.1 + 10510 0.67 0.635927
Target:  5'- -cGGUGCgccgGUCGCCGUc--CugCUCGCg -3'
miRNA:   3'- cuCCGCG----UAGUGGCAcuuGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 9691 0.68 0.557898
Target:  5'- cGAGGCGUGggGCCGUGAcggcggGCugaucgagggaaaAUCUCGCa -3'
miRNA:   3'- -CUCCGCGUagUGGCACU------UG-------------UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 9612 0.68 0.602783
Target:  5'- -cGGCGCcgCGCCGU---CGCgCUCGUa -3'
miRNA:   3'- cuCCGCGuaGUGGCAcuuGUG-GAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8999 0.74 0.297308
Target:  5'- cGGGCucccGCAUgcCGCCGUcGAGCACCUgGCg -3'
miRNA:   3'- cUCCG----CGUA--GUGGCA-CUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 8713 0.67 0.646982
Target:  5'- uGAGGUGCuGUCACCGU---UugCUgGCa -3'
miRNA:   3'- -CUCCGCG-UAGUGGCAcuuGugGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 8612 0.7 0.484864
Target:  5'- uGGGGCGaCGUUACCaagGUGuucGCGgCCUCGCc -3'
miRNA:   3'- -CUCCGC-GUAGUGG---CACu--UGU-GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8249 0.67 0.669039
Target:  5'- -cGGUcaccCGUCACgcgggCGUGcAGCGCCUCGCg -3'
miRNA:   3'- cuCCGc---GUAGUG-----GCAC-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7847 0.68 0.613818
Target:  5'- -cGGCuGCGUCAgcUCGgccAGCACCUUGCg -3'
miRNA:   3'- cuCCG-CGUAGU--GGCac-UUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 7797 0.71 0.415767
Target:  5'- cGAGGUGCAg-GCCGagcUGcAACGCCUgGCg -3'
miRNA:   3'- -CUCCGCGUagUGGC---AC-UUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 7473 0.67 0.669039
Target:  5'- cAGGCG-AUCACCGagccGcGCACC-CGCa -3'
miRNA:   3'- cUCCGCgUAGUGGCa---CuUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 7346 0.7 0.495187
Target:  5'- cGGGCGCAgcuaacCGCCGgcaaaaacucGAGCGCgUCGCc -3'
miRNA:   3'- cUCCGCGUa-----GUGGCa---------CUUGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 6861 0.66 0.690956
Target:  5'- -cGGCGCGcaGCCGc-AGCAgCUCGCg -3'
miRNA:   3'- cuCCGCGUagUGGCacUUGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 6821 0.66 0.701835
Target:  5'- aAGGCGCGguUCGCCuacgugcuggguGUGAGCGCgacCGCu -3'
miRNA:   3'- cUCCGCGU--AGUGG------------CACUUGUGga-GCG- -5'
12775 5' -55.1 NC_003387.1 + 6211 0.68 0.602783
Target:  5'- -uGGUGCAgUCGCCGagcgagcugcgGAACACCugaacUCGCa -3'
miRNA:   3'- cuCCGCGU-AGUGGCa----------CUUGUGG-----AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.