miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 5774 0.68 0.558983
Target:  5'- -cGGcCGCGcUCGCCGcgGAucgACACCUCGg -3'
miRNA:   3'- cuCC-GCGU-AGUGGCa-CU---UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 12774 0.69 0.548161
Target:  5'- --cGCGCucguacucgAUCGCCGcaaUGcGCGCCUCGCa -3'
miRNA:   3'- cucCGCG---------UAGUGGC---ACuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 30976 0.68 0.580797
Target:  5'- -uGGCGCugaCGCC--GAGCGCCUCGg -3'
miRNA:   3'- cuCCGCGua-GUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 26500 0.66 0.690956
Target:  5'- cGGGGCGa--CGCUGUGAaugaaGCGCCgcacgucgUCGCg -3'
miRNA:   3'- -CUCCGCguaGUGGCACU-----UGUGG--------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 22442 0.66 0.701835
Target:  5'- cAGGCGCGg-GCCGcGGcguugGCCUCGCg -3'
miRNA:   3'- cUCCGCGUagUGGCaCUug---UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 32182 0.66 0.716947
Target:  5'- -cGGCGCA--GCCGacGAACACCgcaggggcaggcgcaUCGCu -3'
miRNA:   3'- cuCCGCGUagUGGCa-CUUGUGG---------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 14872 0.67 0.646982
Target:  5'- cGAGGCGagcCGCCGggcgcagGggUgcccgACCUCGCu -3'
miRNA:   3'- -CUCCGCguaGUGGCa------CuuG-----UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 10510 0.67 0.635927
Target:  5'- -cGGUGCgccgGUCGCCGUc--CugCUCGCg -3'
miRNA:   3'- cuCCGCG----UAGUGGCAcuuGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 44089 0.68 0.569865
Target:  5'- cGAGGUcagacgGCGagGCCGcGAACACCUUGg -3'
miRNA:   3'- -CUCCG------CGUagUGGCaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 35852 0.68 0.60168
Target:  5'- --cGUGCAUCGCC-UGGGCGugcggcgccaucuCCUCGCg -3'
miRNA:   3'- cucCGCGUAGUGGcACUUGU-------------GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 36162 0.68 0.602783
Target:  5'- cGuuGCGCAccugCACCuUGAACGCCUgGUa -3'
miRNA:   3'- -CucCGCGUa---GUGGcACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 51444 1.11 0.000721
Target:  5'- cGAGGCGCAUCACCGUGAACACCUCGCc -3'
miRNA:   3'- -CUCCGCGUAGUGGCACUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 25324 0.78 0.148713
Target:  5'- cAGcGCGCGUCguacacagagaacGCCGUGAACGCC-CGCa -3'
miRNA:   3'- cUC-CGCGUAG-------------UGGCACUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 34519 0.76 0.223917
Target:  5'- -cGGUcgucGCGUCGCCGagGcGCACCUCGCa -3'
miRNA:   3'- cuCCG----CGUAGUGGCa-CuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8999 0.74 0.297308
Target:  5'- cGGGCucccGCAUgcCGCCGUcGAGCACCUgGCg -3'
miRNA:   3'- cUCCG----CGUA--GUGGCA-CUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 20177 0.74 0.297308
Target:  5'- aGGGCGCGguugaugCGCUGcu-GCGCCUCGCa -3'
miRNA:   3'- cUCCGCGUa------GUGGCacuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 52235 0.73 0.304834
Target:  5'- cGGGcGCGCAUCGCgacGAGCAgCUCGCg -3'
miRNA:   3'- -CUC-CGCGUAGUGgcaCUUGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 42206 0.73 0.312504
Target:  5'- -cGGCccGCAUCGCCGagccGAGCGCCcCGCu -3'
miRNA:   3'- cuCCG--CGUAGUGGCa---CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 44421 0.68 0.580797
Target:  5'- uGAuGCGCcgCGCCgGUGAuccACACgUCGCc -3'
miRNA:   3'- -CUcCGCGuaGUGG-CACU---UGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 2348 0.67 0.62487
Target:  5'- cGAGGcCGcCGUCGgCGUcGAGCGCCaCGUa -3'
miRNA:   3'- -CUCC-GC-GUAGUgGCA-CUUGUGGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.