miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 30976 0.68 0.580797
Target:  5'- -uGGCGCugaCGCC--GAGCGCCUCGg -3'
miRNA:   3'- cuCCGCGua-GUGGcaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 44089 0.68 0.569865
Target:  5'- cGAGGUcagacgGCGagGCCGcGAACACCUUGg -3'
miRNA:   3'- -CUCCG------CGUagUGGCaCUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 4667 0.72 0.370263
Target:  5'- cGGGGCGCGguaGCgGgUGAACugCUUGCc -3'
miRNA:   3'- -CUCCGCGUag-UGgC-ACUUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 1321 0.73 0.328283
Target:  5'- cAGGCGCucgccgGUCACCGgccGAAUccgaaaucgGCCUCGCu -3'
miRNA:   3'- cUCCGCG------UAGUGGCa--CUUG---------UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 42206 0.73 0.312504
Target:  5'- -cGGCccGCAUCGCCGagccGAGCGCCcCGCu -3'
miRNA:   3'- cuCCG--CGUAGUGGCa---CUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 52235 0.73 0.304834
Target:  5'- cGGGcGCGCAUCGCgacGAGCAgCUCGCg -3'
miRNA:   3'- -CUC-CGCGUAGUGgcaCUUGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 20177 0.74 0.297308
Target:  5'- aGGGCGCGguugaugCGCUGcu-GCGCCUCGCa -3'
miRNA:   3'- cUCCGCGUa------GUGGCacuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 8999 0.74 0.297308
Target:  5'- cGGGCucccGCAUgcCGCCGUcGAGCACCUgGCg -3'
miRNA:   3'- cUCCG----CGUA--GUGGCA-CUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 34519 0.76 0.223917
Target:  5'- -cGGUcgucGCGUCGCCGagGcGCACCUCGCa -3'
miRNA:   3'- cuCCG----CGUAGUGGCa-CuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 25324 0.78 0.148713
Target:  5'- cAGcGCGCGUCguacacagagaacGCCGUGAACGCC-CGCa -3'
miRNA:   3'- cUC-CGCGUAG-------------UGGCACUUGUGGaGCG- -5'
12775 5' -55.1 NC_003387.1 + 50243 0.72 0.379088
Target:  5'- cGAGGCGCcguacgucagCGCCGggcgGuGCACCUCGg -3'
miRNA:   3'- -CUCCGCGua--------GUGGCa---CuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 23832 0.71 0.397155
Target:  5'- aGGGCGCcgCGCCGgGAcucgGCGCCgugcCGCu -3'
miRNA:   3'- cUCCGCGuaGUGGCaCU----UGUGGa---GCG- -5'
12775 5' -55.1 NC_003387.1 + 5774 0.68 0.558983
Target:  5'- -cGGcCGCGcUCGCCGcgGAucgACACCUCGg -3'
miRNA:   3'- cuCC-GCGU-AGUGGCa-CU---UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 12774 0.69 0.548161
Target:  5'- --cGCGCucguacucgAUCGCCGcaaUGcGCGCCUCGCa -3'
miRNA:   3'- cucCGCG---------UAGUGGC---ACuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 4525 0.69 0.548161
Target:  5'- -cGGcCGCcgcCGCCGgugcGGGCACCUUGCg -3'
miRNA:   3'- cuCC-GCGua-GUGGCa---CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 21829 0.69 0.516122
Target:  5'- uGGGaGCGCAagCGCagcguGUGGACACCggCGCa -3'
miRNA:   3'- -CUC-CGCGUa-GUGg----CACUUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 7346 0.7 0.495187
Target:  5'- cGGGCGCAgcuaacCGCCGgcaaaaacucGAGCGCgUCGCc -3'
miRNA:   3'- cUCCGCGUa-----GUGGCa---------CUUGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 1617 0.7 0.474646
Target:  5'- cGGGCGCG----UGUGGGCAgCCUCGCg -3'
miRNA:   3'- cUCCGCGUagugGCACUUGU-GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 19506 0.71 0.434903
Target:  5'- -cGGC-CAUCGCCGaGcGgGCCUCGCg -3'
miRNA:   3'- cuCCGcGUAGUGGCaCuUgUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 37537 0.71 0.415767
Target:  5'- cGGGCGCGggccUCcUCGUcGAuCACCUCGCg -3'
miRNA:   3'- cUCCGCGU----AGuGGCA-CUuGUGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.