miRNA display CGI


Results 101 - 111 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 5774 0.68 0.558983
Target:  5'- -cGGcCGCGcUCGCCGcgGAucgACACCUCGg -3'
miRNA:   3'- cuCC-GCGU-AGUGGCa-CU---UGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 12774 0.69 0.548161
Target:  5'- --cGCGCucguacucgAUCGCCGcaaUGcGCGCCUCGCa -3'
miRNA:   3'- cucCGCG---------UAGUGGC---ACuUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 4525 0.69 0.548161
Target:  5'- -cGGcCGCcgcCGCCGgugcGGGCACCUUGCg -3'
miRNA:   3'- cuCC-GCGua-GUGGCa---CUUGUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 14692 0.69 0.536334
Target:  5'- cGGGGCGcCGUCGCCGcGAuccguugcggugcACGgCUUGCu -3'
miRNA:   3'- -CUCCGC-GUAGUGGCaCU-------------UGUgGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 48410 0.69 0.534193
Target:  5'- -cGGCGUugagccacugccggGUCGCgGUGcGCugCUCGCc -3'
miRNA:   3'- cuCCGCG--------------UAGUGgCACuUGugGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 43786 0.69 0.526724
Target:  5'- cGGGCGCcgugCAUCGcGGugGCCUCGg -3'
miRNA:   3'- cUCCGCGua--GUGGCaCUugUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 13337 0.69 0.526724
Target:  5'- cAGGCGCAcgagCACCucguACACCUCGg -3'
miRNA:   3'- cUCCGCGUa---GUGGcacuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 21829 0.69 0.516122
Target:  5'- uGGGaGCGCAagCGCagcguGUGGACACCggCGCa -3'
miRNA:   3'- -CUC-CGCGUa-GUGg----CACUUGUGGa-GCG- -5'
12775 5' -55.1 NC_003387.1 + 7346 0.7 0.495187
Target:  5'- cGGGCGCAgcuaacCGCCGgcaaaaacucGAGCGCgUCGCc -3'
miRNA:   3'- cUCCGCGUa-----GUGGCa---------CUUGUGgAGCG- -5'
12775 5' -55.1 NC_003387.1 + 1617 0.7 0.474646
Target:  5'- cGGGCGCG----UGUGGGCAgCCUCGCg -3'
miRNA:   3'- cUCCGCGUagugGCACUUGU-GGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 51444 1.11 0.000721
Target:  5'- cGAGGCGCAUCACCGUGAACACCUCGCc -3'
miRNA:   3'- -CUCCGCGUAGUGGCACUUGUGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.