miRNA display CGI


Results 101 - 111 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12775 5' -55.1 NC_003387.1 + 5184 0.68 0.580797
Target:  5'- cGGGGCaggGCAUCaaggcccgGCUGUG-GCGCCUCGg -3'
miRNA:   3'- -CUCCG---CGUAG--------UGGCACuUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 9691 0.68 0.557898
Target:  5'- cGAGGCGUGggGCCGUGAcggcggGCugaucgagggaaaAUCUCGCa -3'
miRNA:   3'- -CUCCGCGUagUGGCACU------UG-------------UGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 36087 0.69 0.548161
Target:  5'- cGAGGCGCA-CGCCGagugcaUGAGCAUgUC-Cg -3'
miRNA:   3'- -CUCCGCGUaGUGGC------ACUUGUGgAGcG- -5'
12775 5' -55.1 NC_003387.1 + 50557 0.69 0.548161
Target:  5'- gGGGGCGC-UUugUGUuGACACCUCa- -3'
miRNA:   3'- -CUCCGCGuAGugGCAcUUGUGGAGcg -5'
12775 5' -55.1 NC_003387.1 + 41788 0.69 0.548161
Target:  5'- cGGGCGCGU-GCCGcGAccuggcgcACGCCUgGCa -3'
miRNA:   3'- cUCCGCGUAgUGGCaCU--------UGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 42011 0.69 0.537405
Target:  5'- uGGGGcCGCcUgGCCGUGAugguCGCCgagCGCc -3'
miRNA:   3'- -CUCC-GCGuAgUGGCACUu---GUGGa--GCG- -5'
12775 5' -55.1 NC_003387.1 + 51728 0.69 0.537405
Target:  5'- --aGCGCAUCcgaccCCGgucGAGCGCCUCGg -3'
miRNA:   3'- cucCGCGUAGu----GGCa--CUUGUGGAGCg -5'
12775 5' -55.1 NC_003387.1 + 21748 0.69 0.52566
Target:  5'- cGAGGCGC-UCGgCGUcAGCGCCaccgacgcgcuguUCGCg -3'
miRNA:   3'- -CUCCGCGuAGUgGCAcUUGUGG-------------AGCG- -5'
12775 5' -55.1 NC_003387.1 + 14044 0.69 0.516122
Target:  5'- -cGGCGCAcccgcacuuUCAgCGgaUGGGCGCCUgGCa -3'
miRNA:   3'- cuCCGCGU---------AGUgGC--ACUUGUGGAgCG- -5'
12775 5' -55.1 NC_003387.1 + 44281 0.69 0.505608
Target:  5'- --cGCGCGguggcUCGCCGUGucucucgauUACCUCGCg -3'
miRNA:   3'- cucCGCGU-----AGUGGCACuu-------GUGGAGCG- -5'
12775 5' -55.1 NC_003387.1 + 29647 0.74 0.26865
Target:  5'- -cGGCGCGaguaACCGgcugcucGAACGCCUCGCc -3'
miRNA:   3'- cuCCGCGUag--UGGCa------CUUGUGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.