miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12776 3' -56.4 NC_003387.1 + 50986 1.06 0.001066
Target:  5'- cAUGCUGUCGAUCAGCACCGGGAUGCGc -3'
miRNA:   3'- -UACGACAGCUAGUCGUGGCCCUACGC- -5'
12776 3' -56.4 NC_003387.1 + 48968 0.74 0.203312
Target:  5'- -aGCUGgCGAUCGuGCACgCGGGcAUGCGg -3'
miRNA:   3'- uaCGACaGCUAGU-CGUG-GCCC-UACGC- -5'
12776 3' -56.4 NC_003387.1 + 18701 0.74 0.220256
Target:  5'- gGUGCggGUCGcgCAGCGCCaGGgcGCGg -3'
miRNA:   3'- -UACGa-CAGCuaGUCGUGGcCCuaCGC- -5'
12776 3' -56.4 NC_003387.1 + 18183 0.74 0.226166
Target:  5'- -cGCUGaCGAUCGGCugCGaGGUGCGc -3'
miRNA:   3'- uaCGACaGCUAGUCGugGCcCUACGC- -5'
12776 3' -56.4 NC_003387.1 + 23955 0.72 0.27839
Target:  5'- cAUGCUGcagcacgUGcgCAGCGCCGGGcgGCu -3'
miRNA:   3'- -UACGACa------GCuaGUCGUGGCCCuaCGc -5'
12776 3' -56.4 NC_003387.1 + 49003 0.71 0.331597
Target:  5'- -gGUacggGUCGAUCAGCGCCGGauagGCGu -3'
miRNA:   3'- uaCGa---CAGCUAGUCGUGGCCcua-CGC- -5'
12776 3' -56.4 NC_003387.1 + 43762 0.7 0.356586
Target:  5'- uUGCUGUUGAUgAGCACCuucAUGCGg -3'
miRNA:   3'- uACGACAGCUAgUCGUGGcccUACGC- -5'
12776 3' -56.4 NC_003387.1 + 26255 0.7 0.38287
Target:  5'- cGUGCUGaUGGUCAGCAUgGGcGUGCu -3'
miRNA:   3'- -UACGACaGCUAGUCGUGgCCcUACGc -5'
12776 3' -56.4 NC_003387.1 + 30252 0.7 0.401093
Target:  5'- -gGUcGUCGGggUCGGCGCCGGGGU-CGg -3'
miRNA:   3'- uaCGaCAGCU--AGUCGUGGCCCUAcGC- -5'
12776 3' -56.4 NC_003387.1 + 32482 0.69 0.41986
Target:  5'- uUGC-GUCGAcccCGGCGCCGuGGUGCGa -3'
miRNA:   3'- uACGaCAGCUa--GUCGUGGCcCUACGC- -5'
12776 3' -56.4 NC_003387.1 + 19212 0.69 0.41986
Target:  5'- cUGCUGUCaacggaucuGAUCAGCgucgcGCCGGGccagGUGCu -3'
miRNA:   3'- uACGACAG---------CUAGUCG-----UGGCCC----UACGc -5'
12776 3' -56.4 NC_003387.1 + 33746 0.69 0.42944
Target:  5'- -aGCUcGUCGAUgcuCGCCGGGGUGCc -3'
miRNA:   3'- uaCGA-CAGCUAgucGUGGCCCUACGc -5'
12776 3' -56.4 NC_003387.1 + 42162 0.69 0.438172
Target:  5'- -cGCUGUCGAUCgaggagcugaccgAGCGCCucaacgaggcGGGcGUGCGc -3'
miRNA:   3'- uaCGACAGCUAG-------------UCGUGG----------CCC-UACGC- -5'
12776 3' -56.4 NC_003387.1 + 11404 0.69 0.439148
Target:  5'- -cGCUGgccgCGAUCGGCcCCGaGGUGCu -3'
miRNA:   3'- uaCGACa---GCUAGUCGuGGCcCUACGc -5'
12776 3' -56.4 NC_003387.1 + 50248 0.69 0.439148
Target:  5'- -cGCcGUaCG-UCAGCGCCGGGcgGUGc -3'
miRNA:   3'- uaCGaCA-GCuAGUCGUGGCCCuaCGC- -5'
12776 3' -56.4 NC_003387.1 + 49351 0.68 0.458933
Target:  5'- -aGC-GUCGGguaCAGCACCGuGGUGCGc -3'
miRNA:   3'- uaCGaCAGCUa--GUCGUGGCcCUACGC- -5'
12776 3' -56.4 NC_003387.1 + 21595 0.67 0.519861
Target:  5'- gAUGUUcUCGggCGGCGCCcaccuggcgcucgGGGGUGCGu -3'
miRNA:   3'- -UACGAcAGCuaGUCGUGG-------------CCCUACGC- -5'
12776 3' -56.4 NC_003387.1 + 36369 0.67 0.520923
Target:  5'- -gGUUGUCcaagcccUCGGCGCCGGGuUGCu -3'
miRNA:   3'- uaCGACAGcu-----AGUCGUGGCCCuACGc -5'
12776 3' -56.4 NC_003387.1 + 65 0.67 0.520923
Target:  5'- -cGCgcUCGAUCGGCGCCGcGGGcguuUGCu -3'
miRNA:   3'- uaCGacAGCUAGUCGUGGC-CCU----ACGc -5'
12776 3' -56.4 NC_003387.1 + 46593 0.67 0.564008
Target:  5'- -gGCaggGUCGc-CAGCACCGGcaGGUGCGu -3'
miRNA:   3'- uaCGa--CAGCuaGUCGUGGCC--CUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.