miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12777 3' -58.4 NC_003387.1 + 13723 0.66 0.531427
Target:  5'- gCGcAGGGCGaUCAgcCuGCGCaGGUUGAc -3'
miRNA:   3'- -GC-UCCCGC-AGUaaGuCGCGcCCGACU- -5'
12777 3' -58.4 NC_003387.1 + 30696 0.66 0.504516
Target:  5'- gCGGGGGCGuuuUCGUgcgccugcggggcgcUCAGC-CGGGCa-- -3'
miRNA:   3'- -GCUCCCGC---AGUA---------------AGUCGcGCCCGacu -5'
12777 3' -58.4 NC_003387.1 + 50242 0.67 0.4604
Target:  5'- aCGAGGcGcCGUacgUCAGCGCcGGGCg-- -3'
miRNA:   3'- -GCUCC-C-GCAguaAGUCGCG-CCCGacu -5'
12777 3' -58.4 NC_003387.1 + 19458 0.68 0.431523
Target:  5'- --cGGGCG-CGUgUCAGUGUGGGCgccGAg -3'
miRNA:   3'- gcuCCCGCaGUA-AGUCGCGCCCGa--CU- -5'
12777 3' -58.4 NC_003387.1 + 44876 0.68 0.431523
Target:  5'- uCGGGGGCGUCGgcgaUUCcgccugcGCGCcGGGCa-- -3'
miRNA:   3'- -GCUCCCGCAGU----AAGu------CGCG-CCCGacu -5'
12777 3' -58.4 NC_003387.1 + 29058 0.68 0.41287
Target:  5'- gGGGGGCGUU--UCGGCGUuucuaGGGCcuguUGAc -3'
miRNA:   3'- gCUCCCGCAGuaAGUCGCG-----CCCG----ACU- -5'
12777 3' -58.4 NC_003387.1 + 36758 0.68 0.403732
Target:  5'- --uGGGCGUCAccgUCAGCGaccggcacuCGGcGCUGGc -3'
miRNA:   3'- gcuCCCGCAGUa--AGUCGC---------GCC-CGACU- -5'
12777 3' -58.4 NC_003387.1 + 20949 0.68 0.403732
Target:  5'- cCGAGGGCGggUCAUccgggcaGGgGCGGGCa-- -3'
miRNA:   3'- -GCUCCCGC--AGUAag-----UCgCGCCCGacu -5'
12777 3' -58.4 NC_003387.1 + 43277 0.68 0.403732
Target:  5'- aGAGcGUGcUCAUggacgugcUCAGCGCGGuGCUGGg -3'
miRNA:   3'- gCUCcCGC-AGUA--------AGUCGCGCC-CGACU- -5'
12777 3' -58.4 NC_003387.1 + 29167 0.68 0.403732
Target:  5'- cCGAGcGGcCGUCGUUCGauuccgagucGUGCGGGUaguUGAa -3'
miRNA:   3'- -GCUC-CC-GCAGUAAGU----------CGCGCCCG---ACU- -5'
12777 3' -58.4 NC_003387.1 + 26026 0.68 0.403732
Target:  5'- aCGAcGGCGUCGacgagCAGCGCGaGCUGc -3'
miRNA:   3'- -GCUcCCGCAGUaa---GUCGCGCcCGACu -5'
12777 3' -58.4 NC_003387.1 + 48262 0.69 0.36849
Target:  5'- gCGGGcucGGCgGUCGgcucggccUUCGGCGCGGGCUc- -3'
miRNA:   3'- -GCUC---CCG-CAGU--------AAGUCGCGCCCGAcu -5'
12777 3' -58.4 NC_003387.1 + 8289 0.69 0.351677
Target:  5'- cCGAGGGCGaCGUguggaucacCGGCGCGGcGCa-- -3'
miRNA:   3'- -GCUCCCGCaGUAa--------GUCGCGCC-CGacu -5'
12777 3' -58.4 NC_003387.1 + 11264 0.7 0.335417
Target:  5'- gCGGGGGCaGUCAgggCGGCGUcaGGGCc-- -3'
miRNA:   3'- -GCUCCCG-CAGUaa-GUCGCG--CCCGacu -5'
12777 3' -58.4 NC_003387.1 + 36503 0.7 0.312068
Target:  5'- aCGAGcGCGgCAUauggCAGCGCaGGCUGAg -3'
miRNA:   3'- -GCUCcCGCaGUAa---GUCGCGcCCGACU- -5'
12777 3' -58.4 NC_003387.1 + 28358 0.72 0.237089
Target:  5'- gGAaGGCGUCGUgucgCAGgGCGGGCg-- -3'
miRNA:   3'- gCUcCCGCAGUAa---GUCgCGCCCGacu -5'
12777 3' -58.4 NC_003387.1 + 34818 0.72 0.225196
Target:  5'- uCGGGGGCGUCgagaauGUUCGucgacggcccGCGCGGGCc-- -3'
miRNA:   3'- -GCUCCCGCAG------UAAGU----------CGCGCCCGacu -5'
12777 3' -58.4 NC_003387.1 + 31321 0.73 0.196629
Target:  5'- cCGGGGGCGUUGgcguccaaggcaUUAGCGCGGGUcGAa -3'
miRNA:   3'- -GCUCCCGCAGUa-----------AGUCGCGCCCGaCU- -5'
12777 3' -58.4 NC_003387.1 + 14189 0.74 0.182595
Target:  5'- uGAGGGCGUCGUgauGGCGCGcGaGCUuGAg -3'
miRNA:   3'- gCUCCCGCAGUAag-UCGCGC-C-CGA-CU- -5'
12777 3' -58.4 NC_003387.1 + 20165 0.74 0.17312
Target:  5'- cCGAGGGCGUCGag-GGCGC-GGUUGAu -3'
miRNA:   3'- -GCUCCCGCAGUaagUCGCGcCCGACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.