Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12777 | 3' | -58.4 | NC_003387.1 | + | 13723 | 0.66 | 0.531427 |
Target: 5'- gCGcAGGGCGaUCAgcCuGCGCaGGUUGAc -3' miRNA: 3'- -GC-UCCCGC-AGUaaGuCGCGcCCGACU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 30696 | 0.66 | 0.504516 |
Target: 5'- gCGGGGGCGuuuUCGUgcgccugcggggcgcUCAGC-CGGGCa-- -3' miRNA: 3'- -GCUCCCGC---AGUA---------------AGUCGcGCCCGacu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 50242 | 0.67 | 0.4604 |
Target: 5'- aCGAGGcGcCGUacgUCAGCGCcGGGCg-- -3' miRNA: 3'- -GCUCC-C-GCAguaAGUCGCG-CCCGacu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 19458 | 0.68 | 0.431523 |
Target: 5'- --cGGGCG-CGUgUCAGUGUGGGCgccGAg -3' miRNA: 3'- gcuCCCGCaGUA-AGUCGCGCCCGa--CU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 44876 | 0.68 | 0.431523 |
Target: 5'- uCGGGGGCGUCGgcgaUUCcgccugcGCGCcGGGCa-- -3' miRNA: 3'- -GCUCCCGCAGU----AAGu------CGCG-CCCGacu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 29058 | 0.68 | 0.41287 |
Target: 5'- gGGGGGCGUU--UCGGCGUuucuaGGGCcuguUGAc -3' miRNA: 3'- gCUCCCGCAGuaAGUCGCG-----CCCG----ACU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 26026 | 0.68 | 0.403732 |
Target: 5'- aCGAcGGCGUCGacgagCAGCGCGaGCUGc -3' miRNA: 3'- -GCUcCCGCAGUaa---GUCGCGCcCGACu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 36758 | 0.68 | 0.403732 |
Target: 5'- --uGGGCGUCAccgUCAGCGaccggcacuCGGcGCUGGc -3' miRNA: 3'- gcuCCCGCAGUa--AGUCGC---------GCC-CGACU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 20949 | 0.68 | 0.403732 |
Target: 5'- cCGAGGGCGggUCAUccgggcaGGgGCGGGCa-- -3' miRNA: 3'- -GCUCCCGC--AGUAag-----UCgCGCCCGacu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 43277 | 0.68 | 0.403732 |
Target: 5'- aGAGcGUGcUCAUggacgugcUCAGCGCGGuGCUGGg -3' miRNA: 3'- gCUCcCGC-AGUA--------AGUCGCGCC-CGACU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 29167 | 0.68 | 0.403732 |
Target: 5'- cCGAGcGGcCGUCGUUCGauuccgagucGUGCGGGUaguUGAa -3' miRNA: 3'- -GCUC-CC-GCAGUAAGU----------CGCGCCCG---ACU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 48262 | 0.69 | 0.36849 |
Target: 5'- gCGGGcucGGCgGUCGgcucggccUUCGGCGCGGGCUc- -3' miRNA: 3'- -GCUC---CCG-CAGU--------AAGUCGCGCCCGAcu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 8289 | 0.69 | 0.351677 |
Target: 5'- cCGAGGGCGaCGUguggaucacCGGCGCGGcGCa-- -3' miRNA: 3'- -GCUCCCGCaGUAa--------GUCGCGCC-CGacu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 11264 | 0.7 | 0.335417 |
Target: 5'- gCGGGGGCaGUCAgggCGGCGUcaGGGCc-- -3' miRNA: 3'- -GCUCCCG-CAGUaa-GUCGCG--CCCGacu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 36503 | 0.7 | 0.312068 |
Target: 5'- aCGAGcGCGgCAUauggCAGCGCaGGCUGAg -3' miRNA: 3'- -GCUCcCGCaGUAa---GUCGCGcCCGACU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 28358 | 0.72 | 0.237089 |
Target: 5'- gGAaGGCGUCGUgucgCAGgGCGGGCg-- -3' miRNA: 3'- gCUcCCGCAGUAa---GUCgCGCCCGacu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 34818 | 0.72 | 0.225196 |
Target: 5'- uCGGGGGCGUCgagaauGUUCGucgacggcccGCGCGGGCc-- -3' miRNA: 3'- -GCUCCCGCAG------UAAGU----------CGCGCCCGacu -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 31321 | 0.73 | 0.196629 |
Target: 5'- cCGGGGGCGUUGgcguccaaggcaUUAGCGCGGGUcGAa -3' miRNA: 3'- -GCUCCCGCAGUa-----------AGUCGCGCCCGaCU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 14189 | 0.74 | 0.182595 |
Target: 5'- uGAGGGCGUCGUgauGGCGCGcGaGCUuGAg -3' miRNA: 3'- gCUCCCGCAGUAag-UCGCGC-C-CGA-CU- -5' |
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12777 | 3' | -58.4 | NC_003387.1 | + | 18402 | 0.74 | 0.17312 |
Target: 5'- gCGAcGGGuCGgccgCGggCAGCGCGGGCUGc -3' miRNA: 3'- -GCU-CCC-GCa---GUaaGUCGCGCCCGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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