miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1278 5' -61 NC_001317.1 + 2741 1.06 0.00017
Target:  5'- cAUCGUCGCAGAGCUGGCCACCGGCGAg -3'
miRNA:   3'- -UAGCAGCGUCUCGACCGGUGGCCGCU- -5'
1278 5' -61 NC_001317.1 + 7100 0.67 0.225254
Target:  5'- ---aUCGCGGcGUUgaGGCCACCGGCa- -3'
miRNA:   3'- uagcAGCGUCuCGA--CCGGUGGCCGcu -5'
1278 5' -61 NC_001317.1 + 9294 0.67 0.225254
Target:  5'- -cCGcCGguGAcagGCUGGCaaucagACCGGCGAg -3'
miRNA:   3'- uaGCaGCguCU---CGACCGg-----UGGCCGCU- -5'
1278 5' -61 NC_001317.1 + 18109 0.67 0.237533
Target:  5'- -cCGcCGaugauaccaauCAGAGCUagaGcGCCACCGGCGAu -3'
miRNA:   3'- uaGCaGC-----------GUCUCGA---C-CGGUGGCCGCU- -5'
1278 5' -61 NC_001317.1 + 22074 0.68 0.176512
Target:  5'- uAUCGccUCGCAcgcuuaaucuuGAGCUGGCCuacuuCCgGGCGGu -3'
miRNA:   3'- -UAGC--AGCGU-----------CUCGACCGGu----GG-CCGCU- -5'
1278 5' -61 NC_001317.1 + 30525 0.68 0.196903
Target:  5'- -gCGUCGcCAGAGCUGGCg--CGGCu- -3'
miRNA:   3'- uaGCAGC-GUCUCGACCGgugGCCGcu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.