Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12780 | 3' | -49.7 | NC_003387.1 | + | 52068 | 0.68 | 0.898527 |
Target: 5'- -cGUCGAauGGUUCAUCGGGc--GUCGCu -3' miRNA: 3'- gcCAGCU--UCAAGUGGCUCaacUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 50261 | 0.75 | 0.552712 |
Target: 5'- uGGcCGAcGUgcgCACCGAGgUGAUCGUg -3' miRNA: 3'- gCCaGCUuCAa--GUGGCUCaACUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 49821 | 1.12 | 0.002642 |
Target: 5'- cCGGUCGAAGUUCACCGAGUUGAUCGCc -3' miRNA: 3'- -GCCAGCUUCAAGUGGCUCAACUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 47463 | 0.68 | 0.905522 |
Target: 5'- gCGaGUCGGcuguugAGUUCGCCGucggccAGcgGGUCGCg -3' miRNA: 3'- -GC-CAGCU------UCAAGUGGC------UCaaCUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 46763 | 0.74 | 0.597402 |
Target: 5'- gGGUCGAgcgacucgcGGUUCGgCGAGcUGAUCGa -3' miRNA: 3'- gCCAGCU---------UCAAGUgGCUCaACUAGCg -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 46129 | 0.69 | 0.859424 |
Target: 5'- -cGUCGcGGaaCACCGGGUUGccguUCGCg -3' miRNA: 3'- gcCAGCuUCaaGUGGCUCAACu---AGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 42037 | 0.66 | 0.963434 |
Target: 5'- cCGG-CGGccacCGCCGAGgcggccgUGGUCGCa -3' miRNA: 3'- -GCCaGCUucaaGUGGCUCa------ACUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 39420 | 0.68 | 0.890507 |
Target: 5'- gGGUCGAGGUgaccgggCGCCGcaagcucGGU--AUCGCg -3' miRNA: 3'- gCCAGCUUCAa------GUGGC-------UCAacUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 38700 | 0.66 | 0.959182 |
Target: 5'- cCGGauucuccUCGggGUaCGCCGGGUUGcccUGCc -3' miRNA: 3'- -GCC-------AGCuuCAaGUGGCUCAACua-GCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 35598 | 0.7 | 0.841977 |
Target: 5'- cCGGUCGAGG-UCGUCGAGc--GUCGCc -3' miRNA: 3'- -GCCAGCUUCaAGUGGCUCaacUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 34518 | 0.72 | 0.709814 |
Target: 5'- cCGGUCGucGcgUCGCCGAGgcGcaccUCGCa -3' miRNA: 3'- -GCCAGCuuCa-AGUGGCUCaaCu---AGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 33468 | 0.78 | 0.39791 |
Target: 5'- gCGGcCGAAG-UCGCCGAGgcGGUCGg -3' miRNA: 3'- -GCCaGCUUCaAGUGGCUCaaCUAGCg -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 30881 | 0.71 | 0.784386 |
Target: 5'- gCGGUagCGggGccaUCGCCGGgaaagcGUUGGUCGCc -3' miRNA: 3'- -GCCA--GCuuCa--AGUGGCU------CAACUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 28933 | 0.69 | 0.883695 |
Target: 5'- gCGG-CGAGGUUCACgccUGAGU--GUCGUg -3' miRNA: 3'- -GCCaGCUUCAAGUG---GCUCAacUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 27250 | 0.67 | 0.924778 |
Target: 5'- gCGGUCGAGGcggC-CCGGcaugccUGGUCGCg -3' miRNA: 3'- -GCCAGCUUCaa-GuGGCUca----ACUAGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 24687 | 0.69 | 0.875868 |
Target: 5'- uGGUCGucAGcUCGCCGAG--GAUCGg -3' miRNA: 3'- gCCAGCu-UCaAGUGGCUCaaCUAGCg -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 24662 | 0.7 | 0.804374 |
Target: 5'- aGGUCGccag-CGCCGAGggUGAcUCGCg -3' miRNA: 3'- gCCAGCuucaaGUGGCUCa-ACU-AGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 23369 | 0.69 | 0.867775 |
Target: 5'- aCGGUC-AGG-UCGCCGAGgaUGAagCGCg -3' miRNA: 3'- -GCCAGcUUCaAGUGGCUCa-ACUa-GCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 19962 | 0.66 | 0.955459 |
Target: 5'- gGGUgGuuGcgCAUCGAGUUGAcagcccgaaUCGCc -3' miRNA: 3'- gCCAgCuuCaaGUGGCUCAACU---------AGCG- -5' |
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12780 | 3' | -49.7 | NC_003387.1 | + | 18811 | 0.69 | 0.883695 |
Target: 5'- gGGUCGGuuugcgcgcAGaUCGCCGAcg-GGUCGCc -3' miRNA: 3'- gCCAGCU---------UCaAGUGGCUcaaCUAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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