Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 12780 | 5' | -59.6 | NC_003387.1 | + | 34704 | 0.66 | 0.487117 |
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Target: 5'- gGCcuGGUaCAuGCGGcGCGACCUgGCCGa -3' miRNA: 3'- -CGucCUA-GU-CGCCcCGCUGGAgUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 5830 | 0.66 | 0.467435 |
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Target: 5'- cGCAa----GGCGGcGGCGGCCUCAaguCCGg -3' miRNA: 3'- -CGUccuagUCGCC-CCGCUGGAGU---GGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 26257 | 0.66 | 0.467435 |
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Target: 5'- uGCugauGGUCAGCauGGGCGugCUCgACCGc -3' miRNA: 3'- -CGuc--CUAGUCGc-CCCGCugGAG-UGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 51303 | 0.66 | 0.457749 |
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Target: 5'- cCAGcucGUCGGCGGcGGCG-CCUCGCa- -3' miRNA: 3'- cGUCc--UAGUCGCC-CCGCuGGAGUGgc -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 21944 | 0.66 | 0.457749 |
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Target: 5'- gGCGGGggCGGCGGcaGGCGuCUgcggCGCUGu -3' miRNA: 3'- -CGUCCuaGUCGCC--CCGCuGGa---GUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 31262 | 0.66 | 0.477226 |
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Target: 5'- cGCGGGcugcgcCAGCGGGGCcggguuaguuGACCa-GCCGu -3' miRNA: 3'- -CGUCCua----GUCGCCCCG----------CUGGagUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 50174 | 0.66 | 0.467435 |
|
Target: 5'- gGCgAGGAUCuGCcGcGGCGACCgcgugcggaaCACCGg -3' miRNA: 3'- -CG-UCCUAGuCGcC-CCGCUGGa---------GUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 26489 | 0.66 | 0.497104 |
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Target: 5'- aCGGcGAUCGcCGGGGCGACgCUgugaaugaagCGCCGc -3' miRNA: 3'- cGUC-CUAGUcGCCCCGCUG-GA----------GUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 45620 | 0.66 | 0.491101 |
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Target: 5'- uGCAGGAgUCGGCGuacGGCGaggcgaagaucggccGCCUggCGCCGa -3' miRNA: 3'- -CGUCCU-AGUCGCc--CCGC---------------UGGA--GUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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