Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12780 | 5' | -59.6 | NC_003387.1 | + | 45620 | 0.66 | 0.491101 |
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Target: 5'- uGCAGGAgUCGGCGuacGGCGaggcgaagaucggccGCCUggCGCCGa -3' miRNA: 3'- -CGUCCU-AGUCGCc--CCGC---------------UGGA--GUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 46713 | 0.71 | 0.243856 |
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Target: 5'- --uGGAUgAGCGaGGCGACCUCGgCGc -3' miRNA: 3'- cguCCUAgUCGCcCCGCUGGAGUgGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 49855 | 1.11 | 0.000296 |
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Target: 5'- aGCAGGAUCAGCGGGGCGACCUCACCGa -3' miRNA: 3'- -CGUCCUAGUCGCCCCGCUGGAGUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 50174 | 0.66 | 0.467435 |
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Target: 5'- gGCgAGGAUCuGCcGcGGCGACCgcgugcggaaCACCGg -3' miRNA: 3'- -CG-UCCUAGuCGcC-CCGCUGGa---------GUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 50946 | 0.67 | 0.448171 |
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Target: 5'- uGCGGGcuuUCAGCucGGGCG-CCagCGCCGc -3' miRNA: 3'- -CGUCCu--AGUCGc-CCCGCuGGa-GUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 51303 | 0.66 | 0.457749 |
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Target: 5'- cCAGcucGUCGGCGGcGGCG-CCUCGCa- -3' miRNA: 3'- cGUCc--UAGUCGCC-CCGCuGGAGUGgc -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 51503 | 0.74 | 0.146365 |
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Target: 5'- aGCAGGAUCAGCGGguuaGGCG-CCgcguucgucgcgggCACCa -3' miRNA: 3'- -CGUCCUAGUCGCC----CCGCuGGa-------------GUGGc -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 51705 | 0.67 | 0.438705 |
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Target: 5'- uCAaGAUguGCGGGGCGAUCUUGUCGc -3' miRNA: 3'- cGUcCUAguCGCCCCGCUGGAGUGGC- -5' |
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| 12780 | 5' | -59.6 | NC_003387.1 | + | 52590 | 0.74 | 0.144804 |
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Target: 5'- gGCGcGGAUC-GCGaGGGCGACCgCAUCGa -3' miRNA: 3'- -CGU-CCUAGuCGC-CCCGCUGGaGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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