Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12780 | 5' | -59.6 | NC_003387.1 | + | 12290 | 0.69 | 0.31932 |
Target: 5'- gGCcGGAUCAGCGGGcCGGg--CACCGg -3' miRNA: 3'- -CGuCCUAGUCGCCCcGCUggaGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 11263 | 0.69 | 0.342729 |
Target: 5'- gGCGGGggCAGuCaGGGCGGCgUCaggGCCGc -3' miRNA: 3'- -CGUCCuaGUC-GcCCCGCUGgAG---UGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 10501 | 0.74 | 0.152763 |
Target: 5'- aGCAaGAUCAGCGGGGCGcucGgCUCGgCGa -3' miRNA: 3'- -CGUcCUAGUCGCCCCGC---UgGAGUgGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 10121 | 0.67 | 0.429355 |
Target: 5'- gGCgAGGGUCaccgGGCGGGGCucGGCCUUcucCCa -3' miRNA: 3'- -CG-UCCUAG----UCGCCCCG--CUGGAGu--GGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 9233 | 0.69 | 0.304391 |
Target: 5'- gGUGGGggC-GCGGGGUG-UCUCACCa -3' miRNA: 3'- -CGUCCuaGuCGCCCCGCuGGAGUGGc -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 7455 | 0.69 | 0.326987 |
Target: 5'- aCGGGGUCGGCGuGGCGAUCcauuccaGCCGc -3' miRNA: 3'- cGUCCUAGUCGCcCCGCUGGag-----UGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 5830 | 0.66 | 0.467435 |
Target: 5'- cGCAa----GGCGGcGGCGGCCUCAaguCCGg -3' miRNA: 3'- -CGUccuagUCGCC-CCGCUGGAGU---GGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 3939 | 0.71 | 0.243856 |
Target: 5'- cGCGGcGAUCAGCGGcGaGCuGGCUgCGCCGa -3' miRNA: 3'- -CGUC-CUAGUCGCC-C-CG-CUGGaGUGGC- -5' |
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12780 | 5' | -59.6 | NC_003387.1 | + | 2198 | 0.69 | 0.311788 |
Target: 5'- cGCGGGcUCAG-GGGuGCcucGugCUCGCCGg -3' miRNA: 3'- -CGUCCuAGUCgCCC-CG---CugGAGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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