miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12781 3' -54.5 NC_003387.1 + 49478 1.13 0.000581
Target:  5'- gGCGCAGCAGUUGCUCCCAUGACUCGCc -3'
miRNA:   3'- -CGCGUCGUCAACGAGGGUACUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 45190 0.74 0.297353
Target:  5'- gGCgGCAGCAGUgccGCUCUCGUucacccucggccgcaGACUCGUc -3'
miRNA:   3'- -CG-CGUCGUCAa--CGAGGGUA---------------CUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 4373 0.73 0.325376
Target:  5'- cGCGCucGGCGGccaggUGCUCCUGauACUCGCg -3'
miRNA:   3'- -CGCG--UCGUCa----ACGAGGGUacUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 49056 0.73 0.358759
Target:  5'- uGCGCuGCuGgcGCUCaCCGggcaGGCUCGCg -3'
miRNA:   3'- -CGCGuCGuCaaCGAG-GGUa---CUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 28085 0.72 0.376326
Target:  5'- cGCGCAGCAGggcgaggUGCgucgggucgCCCA-GGCgCGCa -3'
miRNA:   3'- -CGCGUCGUCa------ACGa--------GGGUaCUGaGCG- -5'
12781 3' -54.5 NC_003387.1 + 369 0.7 0.482645
Target:  5'- uGCGCgAGCGGUUccGCgCCCAucucgucgagUGcACUCGCa -3'
miRNA:   3'- -CGCG-UCGUCAA--CGaGGGU----------AC-UGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 48096 0.7 0.493035
Target:  5'- gGCGCuGCcGcUGCgCCCGcggUGGCUCGCc -3'
miRNA:   3'- -CGCGuCGuCaACGaGGGU---ACUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 44276 0.69 0.52479
Target:  5'- cGCGCcgcGCGGUgGCUCgCCGUGucuCUCGa -3'
miRNA:   3'- -CGCGu--CGUCAaCGAG-GGUACu--GAGCg -5'
12781 3' -54.5 NC_003387.1 + 470 0.68 0.590344
Target:  5'- gGCGCGGC-GUUGCcgucagUCUCGacuggugcuguUGACUCGUc -3'
miRNA:   3'- -CGCGUCGuCAACG------AGGGU-----------ACUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 4634 0.68 0.590344
Target:  5'- gGCGCAGCGGcaGCgccaCCCGUcGAggCGCu -3'
miRNA:   3'- -CGCGUCGUCaaCGa---GGGUA-CUgaGCG- -5'
12781 3' -54.5 NC_003387.1 + 19601 0.68 0.590344
Target:  5'- cGUGUGGCAGUcGUUCCU-UGACgcCGCg -3'
miRNA:   3'- -CGCGUCGUCAaCGAGGGuACUGa-GCG- -5'
12781 3' -54.5 NC_003387.1 + 2909 0.68 0.608119
Target:  5'- gGCGCGGCAGgccgcgggcgagGCUCUCGUcGaACUgCGCc -3'
miRNA:   3'- -CGCGUCGUCaa----------CGAGGGUA-C-UGA-GCG- -5'
12781 3' -54.5 NC_003387.1 + 4910 0.68 0.634871
Target:  5'- gGUGCGGUAGcUGCacugCCCGgcgcGGCgUCGCg -3'
miRNA:   3'- -CGCGUCGUCaACGa---GGGUa---CUG-AGCG- -5'
12781 3' -54.5 NC_003387.1 + 10342 0.67 0.646022
Target:  5'- -gGCAGCcGUUGCgcagCCCGcacaUGAUcCGCa -3'
miRNA:   3'- cgCGUCGuCAACGa---GGGU----ACUGaGCG- -5'
12781 3' -54.5 NC_003387.1 + 23815 0.67 0.657159
Target:  5'- cGCGCAGCAGauacgugaggGCgccgCgCCggGACUCGg -3'
miRNA:   3'- -CGCGUCGUCaa--------CGa---G-GGuaCUGAGCg -5'
12781 3' -54.5 NC_003387.1 + 46651 0.67 0.657159
Target:  5'- aCGCAGaCAGgacggUGCUgCCCugcuUGGC-CGCg -3'
miRNA:   3'- cGCGUC-GUCa----ACGA-GGGu---ACUGaGCG- -5'
12781 3' -54.5 NC_003387.1 + 5326 0.67 0.668273
Target:  5'- gGCGgGGcCGGUUGC-CCCGc-GCUUGCg -3'
miRNA:   3'- -CGCgUC-GUCAACGaGGGUacUGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 15393 0.67 0.679352
Target:  5'- cCGCGGCGGggGCUCguCCAcGGCacgucggCGCg -3'
miRNA:   3'- cGCGUCGUCaaCGAG--GGUaCUGa------GCG- -5'
12781 3' -54.5 NC_003387.1 + 8782 0.67 0.690385
Target:  5'- cGUGCGGCGGcggGCgaccugauUCCCGcucaGCUCGCg -3'
miRNA:   3'- -CGCGUCGUCaa-CG--------AGGGUac--UGAGCG- -5'
12781 3' -54.5 NC_003387.1 + 50286 0.67 0.690385
Target:  5'- cGCGCGuccauGCGGUUGCgcugccacaucUCCCAggcgGGgUCGUu -3'
miRNA:   3'- -CGCGU-----CGUCAACG-----------AGGGUa---CUgAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.