miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12781 5' -57.5 NC_003387.1 + 49512 1.08 0.000643
Target:  5'- uUCACGCUUCGCGGCGAGCUUGCGCUGc -3'
miRNA:   3'- -AGUGCGAAGCGCCGCUCGAACGCGAC- -5'
12781 5' -57.5 NC_003387.1 + 7283 0.75 0.15167
Target:  5'- -gGCGCaggCcCGGCGAGCUUGCGCa- -3'
miRNA:   3'- agUGCGaa-GcGCCGCUCGAACGCGac -5'
12781 5' -57.5 NC_003387.1 + 7967 0.74 0.198764
Target:  5'- --cCGCUUCaCGGCGGGCggGUGCUGc -3'
miRNA:   3'- aguGCGAAGcGCCGCUCGaaCGCGAC- -5'
12781 5' -57.5 NC_003387.1 + 41270 0.71 0.307749
Target:  5'- -aGCGCcccgGCGGCGAGCUgcaGCGCg- -3'
miRNA:   3'- agUGCGaag-CGCCGCUCGAa--CGCGac -5'
12781 5' -57.5 NC_003387.1 + 29773 0.7 0.315409
Target:  5'- -gGCGCcccaCGCGGUcAGCUUGCGCg- -3'
miRNA:   3'- agUGCGaa--GCGCCGcUCGAACGCGac -5'
12781 5' -57.5 NC_003387.1 + 48252 0.7 0.315409
Target:  5'- -gGC-CUUCGCGGCGGGCUcgGCGg-- -3'
miRNA:   3'- agUGcGAAGCGCCGCUCGAa-CGCgac -5'
12781 5' -57.5 NC_003387.1 + 3938 0.7 0.331159
Target:  5'- cCGCgGCgaucaGCGGCGAGCUggcUGCGCc- -3'
miRNA:   3'- aGUG-CGaag--CGCCGCUCGA---ACGCGac -5'
12781 5' -57.5 NC_003387.1 + 19949 0.7 0.331159
Target:  5'- -gGCGgUaCGCGGCGGGUggUUGCGCa- -3'
miRNA:   3'- agUGCgAaGCGCCGCUCG--AACGCGac -5'
12781 5' -57.5 NC_003387.1 + 45706 0.69 0.364368
Target:  5'- -aACGCgaaaGCGGcCGAGCUgcUGCGCg- -3'
miRNA:   3'- agUGCGaag-CGCC-GCUCGA--ACGCGac -5'
12781 5' -57.5 NC_003387.1 + 13048 0.69 0.376523
Target:  5'- gUCGC-CUUCGCGaucGCGAGCUgcugcucccacgccaUGCGCg- -3'
miRNA:   3'- -AGUGcGAAGCGC---CGCUCGA---------------ACGCGac -5'
12781 5' -57.5 NC_003387.1 + 47084 0.69 0.381816
Target:  5'- gCGCGCUUCuCGGCuuGCUcgGCGCg- -3'
miRNA:   3'- aGUGCGAAGcGCCGcuCGAa-CGCGac -5'
12781 5' -57.5 NC_003387.1 + 48919 0.69 0.385371
Target:  5'- gUCGCGCUU-GCGGUGugcgcguucgugcucAGCUUcgagGCGCUGc -3'
miRNA:   3'- -AGUGCGAAgCGCCGC---------------UCGAA----CGCGAC- -5'
12781 5' -57.5 NC_003387.1 + 34422 0.69 0.390746
Target:  5'- -gGCGCcaccgcCGCGGcCGGGUcgGCGCUGg -3'
miRNA:   3'- agUGCGaa----GCGCC-GCUCGaaCGCGAC- -5'
12781 5' -57.5 NC_003387.1 + 6950 0.69 0.40901
Target:  5'- -uGCGCa--GCGGCGGGCagGCGCc- -3'
miRNA:   3'- agUGCGaagCGCCGCUCGaaCGCGac -5'
12781 5' -57.5 NC_003387.1 + 48705 0.68 0.418339
Target:  5'- cUCGCGCUUgGCGuuguCGAGCaccgUGCGCc- -3'
miRNA:   3'- -AGUGCGAAgCGCc---GCUCGa---ACGCGac -5'
12781 5' -57.5 NC_003387.1 + 15456 0.68 0.43738
Target:  5'- gCGCGUgaagCGCGGCGAGgauggucUGCGCa- -3'
miRNA:   3'- aGUGCGaa--GCGCCGCUCga-----ACGCGac -5'
12781 5' -57.5 NC_003387.1 + 1250 0.68 0.43738
Target:  5'- gUCugGCgUUCGCGGUGucgguuGCggUGCgGCUGc -3'
miRNA:   3'- -AGugCG-AAGCGCCGCu-----CGa-ACG-CGAC- -5'
12781 5' -57.5 NC_003387.1 + 17761 0.68 0.447085
Target:  5'- cCAgGCc-CGCGuaaaucGCGAGCUUGCGCa- -3'
miRNA:   3'- aGUgCGaaGCGC------CGCUCGAACGCGac -5'
12781 5' -57.5 NC_003387.1 + 34705 0.68 0.456909
Target:  5'- gCACGCUguacagcCGCGG-GuGCUUGUGCg- -3'
miRNA:   3'- aGUGCGAa------GCGCCgCuCGAACGCGac -5'
12781 5' -57.5 NC_003387.1 + 19652 0.68 0.466847
Target:  5'- gUUACGC-UCGCGGCGcuuGGC--GCGCa- -3'
miRNA:   3'- -AGUGCGaAGCGCCGC---UCGaaCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.