Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12781 | 5' | -57.5 | NC_003387.1 | + | 20503 | 0.67 | 0.487051 |
Target: 5'- gUCGCGCUcgCGCaGCGcGGCgucGCGCUc -3' miRNA: 3'- -AGUGCGAa-GCGcCGC-UCGaa-CGCGAc -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 20948 | 0.67 | 0.518101 |
Target: 5'- uUCugGUUUCGCGcgguGCGGGCUcgGCGa-- -3' miRNA: 3'- -AGugCGAAGCGC----CGCUCGAa-CGCgac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 22090 | 0.66 | 0.560648 |
Target: 5'- -gGCGCUcUCGCGcuUGuGCUUGCGCa- -3' miRNA: 3'- agUGCGA-AGCGCc-GCuCGAACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 25914 | 0.66 | 0.56712 |
Target: 5'- gCGCGCUcaccgaccaccagCGCGGCcucgucGAGCggugcugGCGCUGc -3' miRNA: 3'- aGUGCGAa------------GCGCCG------CUCGaa-----CGCGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 28015 | 0.67 | 0.518101 |
Target: 5'- aCGCGCU---UGGCGAGCUUGgCGUc- -3' miRNA: 3'- aGUGCGAagcGCCGCUCGAAC-GCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 29773 | 0.7 | 0.315409 |
Target: 5'- -gGCGCcccaCGCGGUcAGCUUGCGCg- -3' miRNA: 3'- agUGCGaa--GCGCCGcUCGAACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 34422 | 0.69 | 0.390746 |
Target: 5'- -gGCGCcaccgcCGCGGcCGGGUcgGCGCUGg -3' miRNA: 3'- agUGCGaa----GCGCC-GCUCGaaCGCGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 34705 | 0.68 | 0.456909 |
Target: 5'- gCACGCUguacagcCGCGG-GuGCUUGUGCg- -3' miRNA: 3'- aGUGCGAa------GCGCCgCuCGAACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 39642 | 0.66 | 0.582291 |
Target: 5'- gUCACGCUUCGCcuuGuCGAGC--GCGUa- -3' miRNA: 3'- -AGUGCGAAGCGc--C-GCUCGaaCGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 41270 | 0.71 | 0.307749 |
Target: 5'- -aGCGCcccgGCGGCGAGCUgcaGCGCg- -3' miRNA: 3'- agUGCGaag-CGCCGCUCGAa--CGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 43168 | 0.67 | 0.475886 |
Target: 5'- gCugGCgaaUCcaccccgGCGGCG-GCUUGCGCa- -3' miRNA: 3'- aGugCGa--AG-------CGCCGCuCGAACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 45706 | 0.69 | 0.364368 |
Target: 5'- -aACGCgaaaGCGGcCGAGCUgcUGCGCg- -3' miRNA: 3'- agUGCGaag-CGCC-GCUCGA--ACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 46921 | 0.66 | 0.571445 |
Target: 5'- gUUGCGCUUCgGUGGUGcgggcGGCUUGUuCUGg -3' miRNA: 3'- -AGUGCGAAG-CGCCGC-----UCGAACGcGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 47084 | 0.69 | 0.381816 |
Target: 5'- gCGCGCUUCuCGGCuuGCUcgGCGCg- -3' miRNA: 3'- aGUGCGAAGcGCCGcuCGAa-CGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 48252 | 0.7 | 0.315409 |
Target: 5'- -gGC-CUUCGCGGCGGGCUcgGCGg-- -3' miRNA: 3'- agUGcGAAGCGCCGCUCGAa-CGCgac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 48705 | 0.68 | 0.418339 |
Target: 5'- cUCGCGCUUgGCGuuguCGAGCaccgUGCGCc- -3' miRNA: 3'- -AGUGCGAAgCGCc---GCUCGa---ACGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 48898 | 0.66 | 0.582291 |
Target: 5'- cCGCGaaaUCGCcuGCGAGCUgcGCGUUGg -3' miRNA: 3'- aGUGCga-AGCGc-CGCUCGAa-CGCGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 48919 | 0.69 | 0.385371 |
Target: 5'- gUCGCGCUU-GCGGUGugcgcguucgugcucAGCUUcgagGCGCUGc -3' miRNA: 3'- -AGUGCGAAgCGCCGC---------------UCGAA----CGCGAC- -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 49065 | 0.66 | 0.582291 |
Target: 5'- -gGCGCUcaccgggcaggcUCGCGGCGcGCagGCGUa- -3' miRNA: 3'- agUGCGA------------AGCGCCGCuCGaaCGCGac -5' |
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12781 | 5' | -57.5 | NC_003387.1 | + | 49512 | 1.08 | 0.000643 |
Target: 5'- uUCACGCUUCGCGGCGAGCUUGCGCUGc -3' miRNA: 3'- -AGUGCGAAGCGCCGCUCGAACGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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