miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 3' -56 NC_003387.1 + 42038 0.66 0.678475
Target:  5'- cGGCGGCcaccGCCGagGcGGCCGUgGUCg -3'
miRNA:   3'- -UUGCUGaa--CGGCaaCaCCGGCAgCGG- -5'
12783 3' -56 NC_003387.1 + 16722 0.66 0.678475
Target:  5'- cACGACcucGCCGUcgaucGUGcccucGUCGUCGCCg -3'
miRNA:   3'- uUGCUGaa-CGGCAa----CAC-----CGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 48466 0.66 0.678475
Target:  5'- cGCGAaaucuCUUGCggCGUagUGaGGCCGUCGCg -3'
miRNA:   3'- uUGCU-----GAACG--GCA--ACaCCGGCAGCGg -5'
12783 3' -56 NC_003387.1 + 35441 0.66 0.667527
Target:  5'- -cCGGCUguuaGCUGUcGgGGUCGUCGUCg -3'
miRNA:   3'- uuGCUGAa---CGGCAaCaCCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 27648 0.66 0.667527
Target:  5'- uGCGugUUcacgucauagacGCCGc--UGGCCGUCaGCCg -3'
miRNA:   3'- uUGCugAA------------CGGCaacACCGGCAG-CGG- -5'
12783 3' -56 NC_003387.1 + 12284 0.66 0.667527
Target:  5'- cGGCG-CUgucagGCCGggccgGGCCGguUCGCCg -3'
miRNA:   3'- -UUGCuGAa----CGGCaaca-CCGGC--AGCGG- -5'
12783 3' -56 NC_003387.1 + 35358 0.66 0.667527
Target:  5'- aGACaGGCUcGCCGcaccUGaucGCCGUCGCCu -3'
miRNA:   3'- -UUG-CUGAaCGGCa---ACac-CGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 26288 0.66 0.667527
Target:  5'- cAACGuCgcaaUGCuCGgcGUGGCUGUCGUg -3'
miRNA:   3'- -UUGCuGa---ACG-GCaaCACCGGCAGCGg -5'
12783 3' -56 NC_003387.1 + 206 0.66 0.656546
Target:  5'- cGGCGGCUUGUCGcucUUGUcGCgGUUGCa -3'
miRNA:   3'- -UUGCUGAACGGC---AACAcCGgCAGCGg -5'
12783 3' -56 NC_003387.1 + 3912 0.66 0.656546
Target:  5'- cACGACcgGCgGgacgaUGGCCGcCGCCg -3'
miRNA:   3'- uUGCUGaaCGgCaac--ACCGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 26200 0.66 0.645542
Target:  5'- uGACGGCUcGUCGUcGUcGGCC-UCGCa -3'
miRNA:   3'- -UUGCUGAaCGGCAaCA-CCGGcAGCGg -5'
12783 3' -56 NC_003387.1 + 47459 0.66 0.645542
Target:  5'- uACGGCgagucgGCUGUUGaguucGCCGUCgGCCa -3'
miRNA:   3'- uUGCUGaa----CGGCAACac---CGGCAG-CGG- -5'
12783 3' -56 NC_003387.1 + 7538 0.66 0.645542
Target:  5'- gAGCGGCacugcUGCCGcccUGGCCGaUCGCg -3'
miRNA:   3'- -UUGCUGa----ACGGCaacACCGGC-AGCGg -5'
12783 3' -56 NC_003387.1 + 39402 0.66 0.634526
Target:  5'- gAACGuCUugcccaggucgcUGCCGUcGaGGCCGcCGCCc -3'
miRNA:   3'- -UUGCuGA------------ACGGCAaCaCCGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 2050 0.66 0.634526
Target:  5'- -cCGAgCUgGCCGcgGUGGCgG-CGCCa -3'
miRNA:   3'- uuGCU-GAaCGGCaaCACCGgCaGCGG- -5'
12783 3' -56 NC_003387.1 + 41912 0.67 0.612497
Target:  5'- gGACGccaGCUcgUGCCG-UGUGccGCCGaCGCCg -3'
miRNA:   3'- -UUGC---UGA--ACGGCaACAC--CGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 2555 0.67 0.612497
Target:  5'- gGAUGaACUcGCCG--GUGGCguUGUCGCCg -3'
miRNA:   3'- -UUGC-UGAaCGGCaaCACCG--GCAGCGG- -5'
12783 3' -56 NC_003387.1 + 17016 0.67 0.612497
Target:  5'- cAGCGGCagGCCGUcGUcGCCGUacgGCCc -3'
miRNA:   3'- -UUGCUGaaCGGCAaCAcCGGCAg--CGG- -5'
12783 3' -56 NC_003387.1 + 18967 0.67 0.612497
Target:  5'- cGCGGCgccGCCGUUGcccuuGCCGgggUGCCg -3'
miRNA:   3'- uUGCUGaa-CGGCAACac---CGGCa--GCGG- -5'
12783 3' -56 NC_003387.1 + 29592 0.67 0.612497
Target:  5'- cGAUGACaccgUUGCCGgUGagGGUCG-CGCCg -3'
miRNA:   3'- -UUGCUG----AACGGCaACa-CCGGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.