miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12783 3' -56 NC_003387.1 + 51964 0.68 0.515197
Target:  5'- -cCGACgucgcUGCCGcgGUGGCCGacCGCa -3'
miRNA:   3'- uuGCUGa----ACGGCaaCACCGGCa-GCGg -5'
12783 3' -56 NC_003387.1 + 49439 0.67 0.590536
Target:  5'- cGGCGGCcgUGUCGg---GGUCGUCGUCc -3'
miRNA:   3'- -UUGCUGa-ACGGCaacaCCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 48543 0.67 0.601503
Target:  5'- gGGCGGCUgauacgaGCCGUUGcGGuCUGgcacCGCCa -3'
miRNA:   3'- -UUGCUGAa------CGGCAACaCC-GGCa---GCGG- -5'
12783 3' -56 NC_003387.1 + 48466 0.66 0.678475
Target:  5'- cGCGAaaucuCUUGCggCGUagUGaGGCCGUCGCg -3'
miRNA:   3'- uUGCU-----GAACG--GCA--ACaCCGGCAGCGg -5'
12783 3' -56 NC_003387.1 + 47916 1.1 0.000635
Target:  5'- gAACGACUUGCCGUUGUGGCCGUCGCCg -3'
miRNA:   3'- -UUGCUGAACGGCAACACCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 47459 0.66 0.645542
Target:  5'- uACGGCgagucgGCUGUUGaguucGCCGUCgGCCa -3'
miRNA:   3'- uUGCUGaa----CGGCAACac---CGGCAG-CGG- -5'
12783 3' -56 NC_003387.1 + 44606 0.7 0.415274
Target:  5'- gAGCGACgccgucggGCCGUggcgcgagcgUGUGGCCcUgGCCg -3'
miRNA:   3'- -UUGCUGaa------CGGCA----------ACACCGGcAgCGG- -5'
12783 3' -56 NC_003387.1 + 42038 0.66 0.678475
Target:  5'- cGGCGGCcaccGCCGagGcGGCCGUgGUCg -3'
miRNA:   3'- -UUGCUGaa--CGGCaaCaCCGGCAgCGG- -5'
12783 3' -56 NC_003387.1 + 41912 0.67 0.612497
Target:  5'- gGACGccaGCUcgUGCCG-UGUGccGCCGaCGCCg -3'
miRNA:   3'- -UUGC---UGA--ACGGCaACAC--CGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 41401 0.67 0.568715
Target:  5'- gAACGACUggacaaucucGCCGagcUUGccGCUGUCGCCg -3'
miRNA:   3'- -UUGCUGAa---------CGGC---AACacCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 39452 0.73 0.29729
Target:  5'- -uCGACUUGCCcuugGUGGCC-UUGCCc -3'
miRNA:   3'- uuGCUGAACGGcaa-CACCGGcAGCGG- -5'
12783 3' -56 NC_003387.1 + 39402 0.66 0.634526
Target:  5'- gAACGuCUugcccaggucgcUGCCGUcGaGGCCGcCGCCc -3'
miRNA:   3'- -UUGCuGA------------ACGGCAaCaCCGGCaGCGG- -5'
12783 3' -56 NC_003387.1 + 38574 0.67 0.605898
Target:  5'- cGGCGAggugccacacCUUGCCGUUagauggGUGGCaguaauaccacuugGUCGCCg -3'
miRNA:   3'- -UUGCU----------GAACGGCAA------CACCGg-------------CAGCGG- -5'
12783 3' -56 NC_003387.1 + 35441 0.66 0.667527
Target:  5'- -cCGGCUguuaGCUGUcGgGGUCGUCGUCg -3'
miRNA:   3'- uuGCUGAa---CGGCAaCaCCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 35358 0.66 0.667527
Target:  5'- aGACaGGCUcGCCGcaccUGaucGCCGUCGCCu -3'
miRNA:   3'- -UUG-CUGAaCGGCa---ACac-CGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 35069 0.67 0.568715
Target:  5'- cACGcCUUGCCcUUGUcggucgGGCCGaggcUCGCCu -3'
miRNA:   3'- uUGCuGAACGGcAACA------CCGGC----AGCGG- -5'
12783 3' -56 NC_003387.1 + 33414 0.68 0.557878
Target:  5'- cGCGAg--GCCGUUGUgcGGCUGU-GCCu -3'
miRNA:   3'- uUGCUgaaCGGCAACA--CCGGCAgCGG- -5'
12783 3' -56 NC_003387.1 + 32238 0.77 0.145423
Target:  5'- cGCGACgagcugGCCGaccgccUGGCCGUCGCCg -3'
miRNA:   3'- uUGCUGaa----CGGCaac---ACCGGCAGCGG- -5'
12783 3' -56 NC_003387.1 + 31934 0.68 0.553559
Target:  5'- aAACcGCUUGCCGUUaccaaagccgagGGCCGacgCGCCu -3'
miRNA:   3'- -UUGcUGAACGGCAAca----------CCGGCa--GCGG- -5'
12783 3' -56 NC_003387.1 + 31010 0.67 0.612497
Target:  5'- cACGACcagGUCGgcGcgGGCCGcgcUCGCCg -3'
miRNA:   3'- uUGCUGaa-CGGCaaCa-CCGGC---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.