miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 48838 0.69 0.24571
Target:  5'- gCUCgGCGCGacgcacggcGUGCaCGCCCUgGUGcgcAGCCg -3'
miRNA:   3'- -GAG-CGCGU---------CGCG-GCGGGAgCAC---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 30862 0.69 0.24571
Target:  5'- gCUCGUGC-GCGUCgGCaCCUgGUGcGCCg -3'
miRNA:   3'- -GAGCGCGuCGCGG-CG-GGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 48430 0.69 0.211402
Target:  5'- gUCGCGguGCGCUGCUCgccCGc-GGCCu -3'
miRNA:   3'- gAGCGCguCGCGGCGGGa--GCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 10531 0.69 0.216819
Target:  5'- gCUCGCGCA-CGCC-CgCCUCGUuGAGgCg -3'
miRNA:   3'- -GAGCGCGUcGCGGcG-GGAGCA-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 6364 0.69 0.219019
Target:  5'- gUCGCGCuuggccucggccgcgGGCGaCGCCUUgCGUGGGCg -3'
miRNA:   3'- gAGCGCG---------------UCGCgGCGGGA-GCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 7011 0.69 0.219019
Target:  5'- gUCGCGCAGCagcucgGCCGCUUUCGcGuucaacggcaggcccGGCCg -3'
miRNA:   3'- gAGCGCGUCG------CGGCGGGAGCaC---------------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 1401 0.69 0.220682
Target:  5'- gUCGCGCucgaaguugugcgaGGCGCCGCCgC-CGacGAGCUg -3'
miRNA:   3'- gAGCGCG--------------UCGCGGCGG-GaGCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 52095 0.69 0.228011
Target:  5'- -cCGCgGCGGCgacGCUGCCCUCGcccugcucggccUGAGCg -3'
miRNA:   3'- gaGCG-CGUCG---CGGCGGGAGC------------ACUCGg -5'
12784 3' -62.3 NC_003387.1 + 31208 0.69 0.24571
Target:  5'- aCUCaGCGCAGCgGCCGgC-UCGUGcAGCg -3'
miRNA:   3'- -GAG-CGCGUCG-CGGCgGgAGCAC-UCGg -5'
12784 3' -62.3 NC_003387.1 + 18962 0.69 0.24571
Target:  5'- -aCGCucGCGGCGCCGCCgUUGcccuuGCCg -3'
miRNA:   3'- gaGCG--CGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 12196 0.68 0.258133
Target:  5'- cCUCGgGCAG-GUCGCUgCUCGgugccGGGCCa -3'
miRNA:   3'- -GAGCgCGUCgCGGCGG-GAGCa----CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 15268 0.68 0.249384
Target:  5'- --gGCGCAGCGCCGCCagcauggcaaccgUCGgcggcuugGGGCUc -3'
miRNA:   3'- gagCGCGUCGCGGCGGg------------AGCa-------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 28577 0.68 0.251858
Target:  5'- -cCGCGuUGGCGuuGUCCUCGggcaGGCCg -3'
miRNA:   3'- gaGCGC-GUCGCggCGGGAGCac--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 51419 0.68 0.258133
Target:  5'- -gCGCcuGCGGCGCCGCC-UCGaacUGcGCCg -3'
miRNA:   3'- gaGCG--CGUCGCGGCGGgAGC---ACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 6763 0.68 0.284512
Target:  5'- --aGCGCA-CGCCucGCCCUUGcgcGGGCCg -3'
miRNA:   3'- gagCGCGUcGCGG--CGGGAGCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 39057 0.68 0.284512
Target:  5'- --aGCGUcGaCGgCGCCCUCGgcgaccGAGCCg -3'
miRNA:   3'- gagCGCGuC-GCgGCGGGAGCa-----CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 38292 0.68 0.282461
Target:  5'- -cCGCGCGGCggcacGCUGUCgUCGUcguucguguggucuGAGCCg -3'
miRNA:   3'- gaGCGCGUCG-----CGGCGGgAGCA--------------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 32544 0.68 0.277723
Target:  5'- -gCGCaGCAGCGCaucaaccgCGCCCUCGac-GCCc -3'
miRNA:   3'- gaGCG-CGUCGCG--------GCGGGAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 694 0.68 0.251858
Target:  5'- gUCGCGCGccacgucauuGCGCCGCaaggcaUCGUGucgacGGCCu -3'
miRNA:   3'- gAGCGCGU----------CGCGGCGgg----AGCAC-----UCGG- -5'
12784 3' -62.3 NC_003387.1 + 3048 0.68 0.251858
Target:  5'- --gGCGCAGgCGuucCCGCCCgccUCGgucGAGCCg -3'
miRNA:   3'- gagCGCGUC-GC---GGCGGG---AGCa--CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.