miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 17561 0.73 0.125419
Target:  5'- uUCGCGCgucAGC-CCGCCCUCGcUGgugucgugcGGCCa -3'
miRNA:   3'- gAGCGCG---UCGcGGCGGGAGC-AC---------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 17723 0.66 0.335705
Target:  5'- --gGCGguGCGCCccgGCCCggccGGGCCg -3'
miRNA:   3'- gagCGCguCGCGG---CGGGagcaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 18219 0.67 0.288647
Target:  5'- ---uCGCGGCGCCGCagcggcgggcguaCUCGUaGGCCg -3'
miRNA:   3'- gagcGCGUCGCGGCGg------------GAGCAcUCGG- -5'
12784 3' -62.3 NC_003387.1 + 18309 0.69 0.24571
Target:  5'- -cCGCgGCGGUGgCGCCCggcaacggCGUG-GCCg -3'
miRNA:   3'- gaGCG-CGUCGCgGCGGGa-------GCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 18708 0.75 0.085867
Target:  5'- gUCGCGCAGCGCCagggcgcgGCaCUCGUcGAGCa -3'
miRNA:   3'- gAGCGCGUCGCGG--------CGgGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 18962 0.69 0.24571
Target:  5'- -aCGCucGCGGCGCCGCCgUUGcccuuGCCg -3'
miRNA:   3'- gaGCG--CGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 19243 0.66 0.343545
Target:  5'- aUCGCG-GGCGCCGaccgCCUCGgcgacuucGGCCg -3'
miRNA:   3'- gAGCGCgUCGCGGCg---GGAGCac------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 19399 0.66 0.359617
Target:  5'- gUUGUGCAGCGUCGUgcgggCCUUGaugccaaGGGCCu -3'
miRNA:   3'- gAGCGCGUCGCGGCG-----GGAGCa------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 19861 0.66 0.351516
Target:  5'- -cCGaCGCGGCGCugggCGCCCUgcaagacacCGUGcugGGCCu -3'
miRNA:   3'- gaGC-GCGUCGCG----GCGGGA---------GCAC---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 19966 0.7 0.195844
Target:  5'- -cCGCGUcGacuucacaaCGCUGCCCUCG-GGGCCg -3'
miRNA:   3'- gaGCGCGuC---------GCGGCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 20508 0.73 0.112653
Target:  5'- gCUCGCGCAGCGCggcguCGCgCUCGUcGGUg -3'
miRNA:   3'- -GAGCGCGUCGCG-----GCGgGAGCAcUCGg -5'
12784 3' -62.3 NC_003387.1 + 20792 0.66 0.359617
Target:  5'- --gGCGCGGauCUGCUCg-GUGAGCCa -3'
miRNA:   3'- gagCGCGUCgcGGCGGGagCACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 21469 0.69 0.233788
Target:  5'- gCUgGCGCAGC-CCGCgCCg-GUcGGGCCg -3'
miRNA:   3'- -GAgCGCGUCGcGGCG-GGagCA-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 21600 0.68 0.271064
Target:  5'- uCUCGgGCGGCGCCcaccugGCgCUCGgGGGUg -3'
miRNA:   3'- -GAGCgCGUCGCGG------CGgGAGCaCUCGg -5'
12784 3' -62.3 NC_003387.1 + 22107 0.7 0.181297
Target:  5'- gCUUGCGCAGguUGCCGUgCgUCGUGAugugGCCg -3'
miRNA:   3'- -GAGCGCGUC--GCGGCGgG-AGCACU----CGG- -5'
12784 3' -62.3 NC_003387.1 + 22352 0.66 0.335705
Target:  5'- -aUGCGCAGCgaGCUGCaggcggucgaCUCGUGAaugugGCCg -3'
miRNA:   3'- gaGCGCGUCG--CGGCGg---------GAGCACU-----CGG- -5'
12784 3' -62.3 NC_003387.1 + 22654 0.67 0.327997
Target:  5'- gCUCGCccCGGCgGCCGUCagggcgcgCUCGUGGGCg -3'
miRNA:   3'- -GAGCGc-GUCG-CGGCGG--------GAGCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 22996 0.7 0.206101
Target:  5'- -cCGCGUAGCuGCCGUCgUCGgccUGGGCg -3'
miRNA:   3'- gaGCGCGUCG-CGGCGGgAGC---ACUCGg -5'
12784 3' -62.3 NC_003387.1 + 23841 0.67 0.291431
Target:  5'- -cCGCGCcuaAGcCGCCGCagUCG-GGGCCg -3'
miRNA:   3'- gaGCGCG---UC-GCGGCGggAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 25460 0.66 0.375366
Target:  5'- cCUCGCGCGaccaggcaugccGgGCCGCCUcgaccgcgCGUGucagcucGGCCg -3'
miRNA:   3'- -GAGCGCGU------------CgCGGCGGGa-------GCAC-------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.