miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 12196 0.68 0.258133
Target:  5'- cCUCGgGCAG-GUCGCUgCUCGgugccGGGCCa -3'
miRNA:   3'- -GAGCgCGUCgCGGCGG-GAGCa----CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 39746 0.68 0.251858
Target:  5'- gCUCGuCGuCGGUgGCCGCCCg-GUacGAGCCg -3'
miRNA:   3'- -GAGC-GC-GUCG-CGGCGGGagCA--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 28577 0.68 0.251858
Target:  5'- -cCGCGuUGGCGuuGUCCUCGggcaGGCCg -3'
miRNA:   3'- gaGCGC-GUCGCggCGGGAGCac--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 15268 0.68 0.249384
Target:  5'- --gGCGCAGCGCCGCCagcauggcaaccgUCGgcggcuugGGGCUc -3'
miRNA:   3'- gagCGCGUCGCGGCGGg------------AGCa-------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 45544 0.68 0.251238
Target:  5'- -cCGUGCGGCaaggcgauccGCCGCCagCUCGUcggcacggccgagGAGCCg -3'
miRNA:   3'- gaGCGCGUCG----------CGGCGG--GAGCA-------------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 3048 0.68 0.251858
Target:  5'- --gGCGCAGgCGuucCCGCCCgccUCGgucGAGCCg -3'
miRNA:   3'- gagCGCGUC-GC---GGCGGG---AGCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 694 0.68 0.251858
Target:  5'- gUCGCGCGccacgucauuGCGCCGCaaggcaUCGUGucgacGGCCu -3'
miRNA:   3'- gAGCGCGU----------CGCGGCGgg----AGCAC-----UCGG- -5'
12784 3' -62.3 NC_003387.1 + 30034 0.68 0.251858
Target:  5'- -cCGC-CAGCGCCGCCgUCGacaccGCCc -3'
miRNA:   3'- gaGCGcGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 51419 0.68 0.258133
Target:  5'- -gCGCcuGCGGCGCCGCC-UCGaacUGcGCCg -3'
miRNA:   3'- gaGCG--CGUCGCGGCGGgAGC---ACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 32544 0.68 0.277723
Target:  5'- -gCGCaGCAGCGCaucaaccgCGCCCUCGac-GCCc -3'
miRNA:   3'- gaGCG-CGUCGCG--------GCGGGAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 38292 0.68 0.282461
Target:  5'- -cCGCGCGGCggcacGCUGUCgUCGUcguucguguggucuGAGCCg -3'
miRNA:   3'- gaGCGCGUCG-----CGGCGGgAGCA--------------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 8459 0.67 0.327997
Target:  5'- -cCGCGCGGCGCgGUgUUUGcUGcaGGCCa -3'
miRNA:   3'- gaGCGCGUCGCGgCGgGAGC-AC--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 22654 0.67 0.327997
Target:  5'- gCUCGCccCGGCgGCCGUCagggcgcgCUCGUGGGCg -3'
miRNA:   3'- -GAGCGc-GUCG-CGGCGG--------GAGCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 26809 0.67 0.313714
Target:  5'- -cCGCGCugguggucggugagcGCGCCGCCCUgGac-GCCg -3'
miRNA:   3'- gaGCGCGu--------------CGCGGCGGGAgCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 29310 0.67 0.312975
Target:  5'- -aUGaCGCAgGCGCCGCgCUUGUcGGGCa -3'
miRNA:   3'- gaGC-GCGU-CGCGGCGgGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 33558 0.67 0.305662
Target:  5'- -cCGUGCGG-GCCgcGCCCUCGacagcgucgacGAGCCa -3'
miRNA:   3'- gaGCGCGUCgCGG--CGGGAGCa----------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 4768 0.67 0.305662
Target:  5'- gCUCGCGguGCuucGCgGCCCacacggcgUCGUGcccauGCCu -3'
miRNA:   3'- -GAGCGCguCG---CGgCGGG--------AGCACu----CGG- -5'
12784 3' -62.3 NC_003387.1 + 4187 0.67 0.305662
Target:  5'- cCUCgGCGCGGUGCUucgGCCaccgCGUGucGGCCc -3'
miRNA:   3'- -GAG-CGCGUCGCGG---CGGga--GCAC--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 30532 0.67 0.305662
Target:  5'- gCUUGgGUGGCccacccgauaccGCCGCCCcCGccUGGGCCg -3'
miRNA:   3'- -GAGCgCGUCG------------CGGCGGGaGC--ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 34146 0.67 0.298481
Target:  5'- aCUCGacgaGCaccagGGCGUCGCCCUCG---GCCu -3'
miRNA:   3'- -GAGCg---CG-----UCGCGGCGGGAGCacuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.