miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 14976 0.68 0.267131
Target:  5'- gUCGCcgaGCAGCuugccgucgaauguuGCCGCCCUCGgcuuGUCg -3'
miRNA:   3'- gAGCG---CGUCG---------------CGGCGGGAGCacu-CGG- -5'
12784 3' -62.3 NC_003387.1 + 21600 0.68 0.271064
Target:  5'- uCUCGgGCGGCGCCcaccugGCgCUCGgGGGUg -3'
miRNA:   3'- -GAGCgCGUCGCGG------CGgGAGCaCUCGg -5'
12784 3' -62.3 NC_003387.1 + 11619 0.68 0.271064
Target:  5'- gUCGUGCAGCGCCaGCagCUCGc-GGCUc -3'
miRNA:   3'- gAGCGCGUCGCGG-CGg-GAGCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 35159 0.68 0.271064
Target:  5'- --aGCGgGGCGUuguCGCCCUUGUcacccuucGGGCCg -3'
miRNA:   3'- gagCGCgUCGCG---GCGGGAGCA--------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 11890 0.68 0.277723
Target:  5'- gUCGCGCacgaucGGCGCCG-UCUUGUGcccuuuGGCCu -3'
miRNA:   3'- gAGCGCG------UCGCGGCgGGAGCAC------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 51075 0.68 0.277723
Target:  5'- cCUCGaCGUGGCgGCCGUCgUCGUccaucAGCCa -3'
miRNA:   3'- -GAGC-GCGUCG-CGGCGGgAGCAc----UCGG- -5'
12784 3' -62.3 NC_003387.1 + 29036 0.68 0.277723
Target:  5'- gCUCGCGUuGUauccgGCCGCCU---UGAGCCg -3'
miRNA:   3'- -GAGCGCGuCG-----CGGCGGGagcACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 32544 0.68 0.277723
Target:  5'- -gCGCaGCAGCGCaucaaccgCGCCCUCGac-GCCc -3'
miRNA:   3'- gaGCG-CGUCGCG--------GCGGGAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 38292 0.68 0.282461
Target:  5'- -cCGCGCGGCggcacGCUGUCgUCGUcguucguguggucuGAGCCg -3'
miRNA:   3'- gaGCGCGUCG-----CGGCGGgAGCA--------------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 39057 0.68 0.284512
Target:  5'- --aGCGUcGaCGgCGCCCUCGgcgaccGAGCCg -3'
miRNA:   3'- gagCGCGuC-GCgGCGGGAGCa-----CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 6763 0.68 0.284512
Target:  5'- --aGCGCA-CGCCucGCCCUUGcgcGGGCCg -3'
miRNA:   3'- gagCGCGUcGCGG--CGGGAGCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 18219 0.67 0.288647
Target:  5'- ---uCGCGGCGCCGCagcggcgggcguaCUCGUaGGCCg -3'
miRNA:   3'- gagcGCGUCGCGGCGg------------GAGCAcUCGG- -5'
12784 3' -62.3 NC_003387.1 + 11324 0.67 0.291431
Target:  5'- aCUCGUGCuGCGCCucggucGCCCggCGcucGGCCu -3'
miRNA:   3'- -GAGCGCGuCGCGG------CGGGa-GCac-UCGG- -5'
12784 3' -62.3 NC_003387.1 + 36828 0.67 0.291431
Target:  5'- gCUCGgGguGCggGCUGUCCUCGUccucGGGCa -3'
miRNA:   3'- -GAGCgCguCG--CGGCGGGAGCA----CUCGg -5'
12784 3' -62.3 NC_003387.1 + 51609 0.67 0.291431
Target:  5'- -gUGCGCccuAGCGUCGCUCaUGUGAccGCCg -3'
miRNA:   3'- gaGCGCG---UCGCGGCGGGaGCACU--CGG- -5'
12784 3' -62.3 NC_003387.1 + 23841 0.67 0.291431
Target:  5'- -cCGCGCcuaAGcCGCCGCagUCG-GGGCCg -3'
miRNA:   3'- gaGCGCG---UC-GCGGCGggAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 34146 0.67 0.298481
Target:  5'- aCUCGacgaGCaccagGGCGUCGCCCUCG---GCCu -3'
miRNA:   3'- -GAGCg---CG-----UCGCGGCGGGAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 33558 0.67 0.305662
Target:  5'- -cCGUGCGG-GCCgcGCCCUCGacagcgucgacGAGCCa -3'
miRNA:   3'- gaGCGCGUCgCGG--CGGGAGCa----------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 4768 0.67 0.305662
Target:  5'- gCUCGCGguGCuucGCgGCCCacacggcgUCGUGcccauGCCu -3'
miRNA:   3'- -GAGCGCguCG---CGgCGGG--------AGCACu----CGG- -5'
12784 3' -62.3 NC_003387.1 + 4187 0.67 0.305662
Target:  5'- cCUCgGCGCGGUGCUucgGCCaccgCGUGucGGCCc -3'
miRNA:   3'- -GAG-CGCGUCGCGG---CGGga--GCAC--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.