miRNA display CGI


Results 61 - 80 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 6364 0.69 0.219019
Target:  5'- gUCGCGCuuggccucggccgcgGGCGaCGCCUUgCGUGGGCg -3'
miRNA:   3'- gAGCGCG---------------UCGCgGCGGGA-GCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 10531 0.69 0.216819
Target:  5'- gCUCGCGCA-CGCC-CgCCUCGUuGAGgCg -3'
miRNA:   3'- -GAGCGCGUcGCGGcG-GGAGCA-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 48430 0.69 0.211402
Target:  5'- gUCGCGguGCGCUGCUCgccCGc-GGCCu -3'
miRNA:   3'- gAGCGCguCGCGGCGGGa--GCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 22996 0.7 0.206101
Target:  5'- -cCGCGUAGCuGCCGUCgUCGgccUGGGCg -3'
miRNA:   3'- gaGCGCGUCG-CGGCGGgAGC---ACUCGg -5'
12784 3' -62.3 NC_003387.1 + 30183 0.7 0.206101
Target:  5'- -cCGCGUcGaGCCaGCCCUCGgccUGGGCCa -3'
miRNA:   3'- gaGCGCGuCgCGG-CGGGAGC---ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 12333 0.7 0.206101
Target:  5'- -aCGUGCAGCucGCCGCCgaCGUcGAGgCCc -3'
miRNA:   3'- gaGCGCGUCG--CGGCGGgaGCA-CUC-GG- -5'
12784 3' -62.3 NC_003387.1 + 32544 0.7 0.186037
Target:  5'- -aCG-GCGGCGCCGUCCggUGgcGAGCCg -3'
miRNA:   3'- gaGCgCGUCGCGGCGGGa-GCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 44666 0.7 0.186037
Target:  5'- --aGCGCGG-GCCGCCagCUCGUcGAGCa -3'
miRNA:   3'- gagCGCGUCgCGGCGG--GAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 14822 0.7 0.186037
Target:  5'- -gCGgGCAGCggGUCGCCCUCG-GGGUUg -3'
miRNA:   3'- gaGCgCGUCG--CGGCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 22107 0.7 0.181297
Target:  5'- gCUUGCGCAGguUGCCGUgCgUCGUGAugugGCCg -3'
miRNA:   3'- -GAGCGCGUC--GCGGCGgG-AGCACU----CGG- -5'
12784 3' -62.3 NC_003387.1 + 31131 0.71 0.176665
Target:  5'- --aGCGCcGCGUCGgCCUCGcUGAuGCCg -3'
miRNA:   3'- gagCGCGuCGCGGCgGGAGC-ACU-CGG- -5'
12784 3' -62.3 NC_003387.1 + 27850 0.71 0.172138
Target:  5'- --gGCGCAGCcaCCGCCCgagGUcGAGCCa -3'
miRNA:   3'- gagCGCGUCGc-GGCGGGag-CA-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 9624 0.71 0.155052
Target:  5'- gUCGCGCucguacccGGCGCCcgucaCCCUgGUGuGCCa -3'
miRNA:   3'- gAGCGCG--------UCGCGGc----GGGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 6879 0.72 0.147097
Target:  5'- gCUCGCGCAggaucuccGCGgCGUCgUCGcGGGCCa -3'
miRNA:   3'- -GAGCGCGU--------CGCgGCGGgAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 45193 0.72 0.147097
Target:  5'- --gGCaGCAGUGCCGCUCUCGUucacccucGGCCg -3'
miRNA:   3'- gagCG-CGUCGCGGCGGGAGCAc-------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 49141 0.72 0.139147
Target:  5'- aCUCagGCGCcGCcguuaccauucacGCCGCCCUCGUuGAGCg -3'
miRNA:   3'- -GAG--CGCGuCG-------------CGGCGGGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 8277 0.72 0.135861
Target:  5'- cCUCGCGCAGCGCCucguGCgCgUCGgcGGGCa -3'
miRNA:   3'- -GAGCGCGUCGCGG----CG-GgAGCa-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 17561 0.73 0.125419
Target:  5'- uUCGCGCgucAGC-CCGCCCUCGcUGgugucgugcGGCCa -3'
miRNA:   3'- gAGCGCG---UCGcGGCGGGAGC-AC---------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 8974 0.73 0.112653
Target:  5'- -cUGCGCGGUGCCGCCaacacgCUCGcGGGCUc -3'
miRNA:   3'- gaGCGCGUCGCGGCGG------GAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 20508 0.73 0.112653
Target:  5'- gCUCGCGCAGCGCggcguCGCgCUCGUcGGUg -3'
miRNA:   3'- -GAGCGCGUCGCG-----GCGgGAGCAcUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.