miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 30532 0.67 0.305662
Target:  5'- gCUUGgGUGGCccacccgauaccGCCGCCCcCGccUGGGCCg -3'
miRNA:   3'- -GAGCgCGUCG------------CGGCGGGaGC--ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 37375 0.67 0.305662
Target:  5'- gUCGgGCGGCGgCGCCCcgcugUCGguaucGGGCa -3'
miRNA:   3'- gAGCgCGUCGCgGCGGG-----AGCa----CUCGg -5'
12784 3' -62.3 NC_003387.1 + 41980 0.67 0.305662
Target:  5'- -gCGCGCGGagGCCGCCgCggugcucaagCGgugGGGCCg -3'
miRNA:   3'- gaGCGCGUCg-CGGCGG-Ga---------GCa--CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 29310 0.67 0.312975
Target:  5'- -aUGaCGCAgGCGCCGCgCUUGUcGGGCa -3'
miRNA:   3'- gaGC-GCGU-CGCGGCGgGAGCA-CUCGg -5'
12784 3' -62.3 NC_003387.1 + 26809 0.67 0.313714
Target:  5'- -cCGCGCugguggucggugagcGCGCCGCCCUgGac-GCCg -3'
miRNA:   3'- gaGCGCGu--------------CGCGGCGGGAgCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 26686 0.67 0.32042
Target:  5'- uUCGUGCAGCuCgCGCUgCUCGUcGAcGCCg -3'
miRNA:   3'- gAGCGCGUCGcG-GCGG-GAGCA-CU-CGG- -5'
12784 3' -62.3 NC_003387.1 + 27595 0.67 0.32042
Target:  5'- -gCGCGguGUGCCGCUgguaCGaGGGCCu -3'
miRNA:   3'- gaGCGCguCGCGGCGGga--GCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 8459 0.67 0.327997
Target:  5'- -cCGCGCGGCGCgGUgUUUGcUGcaGGCCa -3'
miRNA:   3'- gaGCGCGUCGCGgCGgGAGC-AC--UCGG- -5'
12784 3' -62.3 NC_003387.1 + 22654 0.67 0.327997
Target:  5'- gCUCGCccCGGCgGCCGUCagggcgcgCUCGUGGGCg -3'
miRNA:   3'- -GAGCGc-GUCG-CGGCGG--------GAGCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 44523 0.67 0.327997
Target:  5'- uUCGUGCcGgGCCGCCCggCGccgcaGGGCUc -3'
miRNA:   3'- gAGCGCGuCgCGGCGGGa-GCa----CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 13327 0.66 0.335705
Target:  5'- aCUCGCGCgccaGGCGCacgaGCaCCUCGUacaccucgGGGUUa -3'
miRNA:   3'- -GAGCGCG----UCGCGg---CG-GGAGCA--------CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 2422 0.66 0.335705
Target:  5'- aUCGCGUugacGGCccaGCCGUUCUCGacGGCCu -3'
miRNA:   3'- gAGCGCG----UCG---CGGCGGGAGCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 52257 0.66 0.335705
Target:  5'- gCUCGCGCcG-GUCGCCgUCGgccGCCg -3'
miRNA:   3'- -GAGCGCGuCgCGGCGGgAGCacuCGG- -5'
12784 3' -62.3 NC_003387.1 + 22352 0.66 0.335705
Target:  5'- -aUGCGCAGCgaGCUGCaggcggucgaCUCGUGAaugugGCCg -3'
miRNA:   3'- gaGCGCGUCG--CGGCGg---------GAGCACU-----CGG- -5'
12784 3' -62.3 NC_003387.1 + 17723 0.66 0.335705
Target:  5'- --gGCGguGCGCCccgGCCCggccGGGCCg -3'
miRNA:   3'- gagCGCguCGCGG---CGGGagcaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 36019 0.66 0.335705
Target:  5'- gUCGUGguGCGCCGCaagCGgaucaaGAGCa -3'
miRNA:   3'- gAGCGCguCGCGGCGggaGCa-----CUCGg -5'
12784 3' -62.3 NC_003387.1 + 19243 0.66 0.343545
Target:  5'- aUCGCG-GGCGCCGaccgCCUCGgcgacuucGGCCg -3'
miRNA:   3'- gAGCGCgUCGCGGCg---GGAGCac------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 38069 0.66 0.343545
Target:  5'- uUCGCGaucGCGauaaCGCCCUCGgccuuGCCc -3'
miRNA:   3'- gAGCGCgu-CGCg---GCGGGAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 35797 0.66 0.343545
Target:  5'- -aCGuCGUAGCGgCGCCCcaugUUGUcGGCCg -3'
miRNA:   3'- gaGC-GCGUCGCgGCGGG----AGCAcUCGG- -5'
12784 3' -62.3 NC_003387.1 + 3653 0.66 0.343545
Target:  5'- -gCGCGCcGCGagcCUGCCCg-GUGAGCg -3'
miRNA:   3'- gaGCGCGuCGC---GGCGGGagCACUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.