miRNA display CGI


Results 81 - 100 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12784 3' -62.3 NC_003387.1 + 18962 0.69 0.24571
Target:  5'- -aCGCucGCGGCGCCGCCgUUGcccuuGCCg -3'
miRNA:   3'- gaGCG--CGUCGCGGCGGgAGCacu--CGG- -5'
12784 3' -62.3 NC_003387.1 + 31208 0.69 0.24571
Target:  5'- aCUCaGCGCAGCgGCCGgC-UCGUGcAGCg -3'
miRNA:   3'- -GAG-CGCGUCG-CGGCgGgAGCAC-UCGg -5'
12784 3' -62.3 NC_003387.1 + 12411 0.69 0.24571
Target:  5'- aCUC-CGguGCGCCGCUgUgG-GAGCUg -3'
miRNA:   3'- -GAGcGCguCGCGGCGGgAgCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 30862 0.69 0.24571
Target:  5'- gCUCGUGC-GCGUCgGCaCCUgGUGcGCCg -3'
miRNA:   3'- -GAGCGCGuCGCGG-CG-GGAgCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 48838 0.69 0.24571
Target:  5'- gCUCgGCGCGacgcacggcGUGCaCGCCCUgGUGcgcAGCCg -3'
miRNA:   3'- -GAG-CGCGU---------CGCG-GCGGGAgCAC---UCGG- -5'
12784 3' -62.3 NC_003387.1 + 18309 0.69 0.24571
Target:  5'- -cCGCgGCGGUGgCGCCCggcaacggCGUG-GCCg -3'
miRNA:   3'- gaGCG-CGUCGCgGCGGGa-------GCACuCGG- -5'
12784 3' -62.3 NC_003387.1 + 21469 0.69 0.233788
Target:  5'- gCUgGCGCAGC-CCGCgCCg-GUcGGGCCg -3'
miRNA:   3'- -GAgCGCGUCGcGGCG-GGagCA-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 27276 0.69 0.233788
Target:  5'- gUCGCGCGaggagaacgccGCacugGCgGCCCUUGaGAGCCg -3'
miRNA:   3'- gAGCGCGU-----------CG----CGgCGGGAGCaCUCGG- -5'
12784 3' -62.3 NC_003387.1 + 52095 0.69 0.228011
Target:  5'- -cCGCgGCGGCgacGCUGCCCUCGcccugcucggccUGAGCg -3'
miRNA:   3'- gaGCG-CGUCG---CGGCGGGAGC------------ACUCGg -5'
12784 3' -62.3 NC_003387.1 + 1401 0.69 0.220682
Target:  5'- gUCGCGCucgaaguugugcgaGGCGCCGCCgC-CGacGAGCUg -3'
miRNA:   3'- gAGCGCG--------------UCGCGGCGG-GaGCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 7011 0.69 0.219019
Target:  5'- gUCGCGCAGCagcucgGCCGCUUUCGcGuucaacggcaggcccGGCCg -3'
miRNA:   3'- gAGCGCGUCG------CGGCGGGAGCaC---------------UCGG- -5'
12784 3' -62.3 NC_003387.1 + 6364 0.69 0.219019
Target:  5'- gUCGCGCuuggccucggccgcgGGCGaCGCCUUgCGUGGGCg -3'
miRNA:   3'- gAGCGCG---------------UCGCgGCGGGA-GCACUCGg -5'
12784 3' -62.3 NC_003387.1 + 10531 0.69 0.216819
Target:  5'- gCUCGCGCA-CGCC-CgCCUCGUuGAGgCg -3'
miRNA:   3'- -GAGCGCGUcGCGGcG-GGAGCA-CUCgG- -5'
12784 3' -62.3 NC_003387.1 + 26146 0.69 0.216819
Target:  5'- gCUCGCGCGGC-CUGaCCC-CGagGAGUCa -3'
miRNA:   3'- -GAGCGCGUCGcGGC-GGGaGCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 48430 0.69 0.211402
Target:  5'- gUCGCGguGCGCUGCUCgccCGc-GGCCu -3'
miRNA:   3'- gAGCGCguCGCGGCGGGa--GCacUCGG- -5'
12784 3' -62.3 NC_003387.1 + 22996 0.7 0.206101
Target:  5'- -cCGCGUAGCuGCCGUCgUCGgccUGGGCg -3'
miRNA:   3'- gaGCGCGUCG-CGGCGGgAGC---ACUCGg -5'
12784 3' -62.3 NC_003387.1 + 30183 0.7 0.206101
Target:  5'- -cCGCGUcGaGCCaGCCCUCGgccUGGGCCa -3'
miRNA:   3'- gaGCGCGuCgCGG-CGGGAGC---ACUCGG- -5'
12784 3' -62.3 NC_003387.1 + 12333 0.7 0.206101
Target:  5'- -aCGUGCAGCucGCCGCCgaCGUcGAGgCCc -3'
miRNA:   3'- gaGCGCGUCG--CGGCGGgaGCA-CUC-GG- -5'
12784 3' -62.3 NC_003387.1 + 28024 0.7 0.200916
Target:  5'- --aGCGCGGCaaGCCGaUCCUCGgcGAGCUg -3'
miRNA:   3'- gagCGCGUCG--CGGC-GGGAGCa-CUCGG- -5'
12784 3' -62.3 NC_003387.1 + 19966 0.7 0.195844
Target:  5'- -cCGCGUcGacuucacaaCGCUGCCCUCG-GGGCCg -3'
miRNA:   3'- gaGCGCGuC---------GCGGCGGGAGCaCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.