Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12784 | 5' | -57.5 | NC_003387.1 | + | 32331 | 0.66 | 0.620641 |
Target: 5'- aUGGACCGCuGCGGCUgAUCgccgCCUaaaCGAc -3' miRNA: 3'- aGCUUGGUG-CGCCGG-UAGa---GGAg--GCU- -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 36734 | 0.69 | 0.407192 |
Target: 5'- cCGGACCAgccagUGCGGCCcgaauUgUCCUCCa- -3' miRNA: 3'- aGCUUGGU-----GCGCCGGu----AgAGGAGGcu -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 36791 | 0.69 | 0.398147 |
Target: 5'- gUCG-GCCGgGCGGCCuUCUCa-CCGAu -3' miRNA: 3'- -AGCuUGGUgCGCCGGuAGAGgaGGCU- -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 37298 | 0.66 | 0.60984 |
Target: 5'- cUCGu-CgGCGCGGUCGUCgaCCgcgCCGAc -3' miRNA: 3'- -AGCuuGgUGCGCCGGUAGa-GGa--GGCU- -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 41084 | 0.66 | 0.62064 |
Target: 5'- gCGAcguugaauagccACUGCGCGGCgGUCgcggCCUUCGu -3' miRNA: 3'- aGCU------------UGGUGCGCCGgUAGa---GGAGGCu -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 42521 | 0.67 | 0.535219 |
Target: 5'- gCGAccgAUCACGCGGCCcgCaugaCCgacgCCGAg -3' miRNA: 3'- aGCU---UGGUGCGCCGGuaGa---GGa---GGCU- -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 43694 | 0.66 | 0.566909 |
Target: 5'- gCGcGACCugGCGGaUCAUCUUgUCCu- -3' miRNA: 3'- aGC-UUGGugCGCC-GGUAGAGgAGGcu -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 44684 | 0.66 | 0.62064 |
Target: 5'- gUCGAGCagauaggcuCGCGCGGCCAcCagCgggCCGAc -3' miRNA: 3'- -AGCUUG---------GUGCGCCGGUaGagGa--GGCU- -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 47731 | 1.09 | 0.000662 |
Target: 5'- gUCGAACCACGCGGCCAUCUCCUCCGAc -3' miRNA: 3'- -AGCUUGGUGCGCCGGUAGAGGAGGCU- -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 48797 | 0.7 | 0.363281 |
Target: 5'- cUGAucGCCGCggcgGCGGCCAUCgUCCcgCCGGu -3' miRNA: 3'- aGCU--UGGUG----CGCCGGUAG-AGGa-GGCU- -5' |
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12784 | 5' | -57.5 | NC_003387.1 | + | 50562 | 0.69 | 0.407192 |
Target: 5'- cCGAGCUgcuCGCGGCuCAUCgagUCCUCgGGg -3' miRNA: 3'- aGCUUGGu--GCGCCG-GUAG---AGGAGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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