miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12785 5' -56.7 NC_003387.1 + 49679 0.68 0.470563
Target:  5'- gGUCGAGCAGUgcugagCGUGCa--GCCCGGc -3'
miRNA:   3'- -CAGCUCGUCGua----GCACGccaUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 42056 0.69 0.435224
Target:  5'- aUCGAccGCGGCGUguacgaccuggcgcgCGUGCugcgGGUGCCCGGc -3'
miRNA:   3'- cAGCU--CGUCGUA---------------GCACG----CCAUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 13895 0.69 0.4219
Target:  5'- -cCGGGCAGguUCGacgucggGUGGcGCCCGAu -3'
miRNA:   3'- caGCUCGUCguAGCa------CGCCaUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 42486 0.69 0.4219
Target:  5'- cUCGGcGCGGCucaucgCGUcGCGGaUGCCCGAc -3'
miRNA:   3'- cAGCU-CGUCGua----GCA-CGCC-AUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 631 0.7 0.412535
Target:  5'- --aGGGCAGCGUCGccgccGCGGcagcgacGCCCGAu -3'
miRNA:   3'- cagCUCGUCGUAGCa----CGCCa------UGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 49736 0.7 0.385227
Target:  5'- aUCGAGCAGCGccUCGU-CGaGgcCCCGAg -3'
miRNA:   3'- cAGCUCGUCGU--AGCAcGC-CauGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 22447 0.7 0.376393
Target:  5'- -gCGGGCcgcGGCGUUGgccucGCGGUACUCGAc -3'
miRNA:   3'- caGCUCG---UCGUAGCa----CGCCAUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 23489 0.7 0.376393
Target:  5'- uUCGAGCGGCGguuc-UGGUGCCCGGc -3'
miRNA:   3'- cAGCUCGUCGUagcacGCCAUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 27279 0.7 0.376393
Target:  5'- -gCGGGCAGCG-CGcccUGCGaGUAUCCGAu -3'
miRNA:   3'- caGCUCGUCGUaGC---ACGC-CAUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 23204 0.7 0.376393
Target:  5'- cGUCGAgggcauuuucGCAGCAUUGUcugcggcuGUGGUGCUCGGc -3'
miRNA:   3'- -CAGCU----------CGUCGUAGCA--------CGCCAUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 30750 0.71 0.350724
Target:  5'- cGUCGGGCAGCAcCGUGuCGG-GCgUGAc -3'
miRNA:   3'- -CAGCUCGUCGUaGCAC-GCCaUGgGCU- -5'
12785 5' -56.7 NC_003387.1 + 32755 0.71 0.341629
Target:  5'- --aGGGCAGCGUUGUgaagucgacGCGGUaccucuuGCCCGAc -3'
miRNA:   3'- cagCUCGUCGUAGCA---------CGCCA-------UGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 17706 0.73 0.274371
Target:  5'- -aCGGGCAGCAaguUCGagGCGGUgcgccccgGCCCGGc -3'
miRNA:   3'- caGCUCGUCGU---AGCa-CGCCA--------UGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 34117 0.73 0.260797
Target:  5'- aUCG-GCGGCGUCGacgucGCGGUGCgCGAa -3'
miRNA:   3'- cAGCuCGUCGUAGCa----CGCCAUGgGCU- -5'
12785 5' -56.7 NC_003387.1 + 39695 0.74 0.22866
Target:  5'- cGUUGcGCAGCGaCGUGCGGgcgcugucgaccuUGCCCGAc -3'
miRNA:   3'- -CAGCuCGUCGUaGCACGCC-------------AUGGGCU- -5'
12785 5' -56.7 NC_003387.1 + 23075 0.76 0.165208
Target:  5'- uUCGAGCAGCcgguuacucgcgccGUCGcgcgUGCGGUGCaCCGAc -3'
miRNA:   3'- cAGCUCGUCG--------------UAGC----ACGCCAUG-GGCU- -5'
12785 5' -56.7 NC_003387.1 + 44946 0.76 0.162094
Target:  5'- cUCGGGCAGCuugCGgaucuUGCGGUGCuCCGAg -3'
miRNA:   3'- cAGCUCGUCGua-GC-----ACGCCAUG-GGCU- -5'
12785 5' -56.7 NC_003387.1 + 19398 0.8 0.087788
Target:  5'- cGUUGuGCAGCGUCGUGCGGgcCuuGAu -3'
miRNA:   3'- -CAGCuCGUCGUAGCACGCCauGggCU- -5'
12785 5' -56.7 NC_003387.1 + 47503 1.08 0.00074
Target:  5'- uGUCGAGCAGCAUCGUGCGGUACCCGAg -3'
miRNA:   3'- -CAGCUCGUCGUAGCACGCCAUGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.