Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12786 | 3' | -55.3 | NC_003387.1 | + | 47532 | 0.66 | 0.701835 |
Target: 5'- aGGGCGACCguuaCGGCGagguCGUGcuc-GUCGg -3' miRNA: 3'- -UCCGCUGGa---GCCGC----GCACuuuaCAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 46722 | 1.09 | 0.000945 |
Target: 5'- gAGGCGACCUCGGCGCGUGAAAUGUCAg -3' miRNA: 3'- -UCCGCUGGAGCCGCGCACUUUACAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 46423 | 0.66 | 0.712644 |
Target: 5'- cGGCGACCUCGGUcaGCacGGccAcgGUCGc -3' miRNA: 3'- uCCGCUGGAGCCG--CGcaCU--UuaCAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 46128 | 0.68 | 0.558983 |
Target: 5'- cGGUGG-CUCGG-GCGUGAGGUGcCGc -3' miRNA: 3'- uCCGCUgGAGCCgCGCACUUUACaGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 45857 | 0.69 | 0.505608 |
Target: 5'- cGGCGACCggcgucuugUUGGCGCccUGAGcgGUCGc -3' miRNA: 3'- uCCGCUGG---------AGCCGCGc-ACUUuaCAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 43802 | 0.66 | 0.680021 |
Target: 5'- cGGUGGCCUCGGa-CGUGAGcacGUUg -3' miRNA: 3'- uCCGCUGGAGCCgcGCACUUua-CAGu -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 43525 | 0.67 | 0.613818 |
Target: 5'- cGGgGugC-CGGUcUGUGAGGUGUCAg -3' miRNA: 3'- uCCgCugGaGCCGcGCACUUUACAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 42466 | 0.68 | 0.574232 |
Target: 5'- gGGGCGACCuugagcccgcgcUCGGCGCGgcucaucgcGUCGc -3' miRNA: 3'- -UCCGCUGG------------AGCCGCGCacuuua---CAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 41972 | 0.67 | 0.62487 |
Target: 5'- cGGCGAUCgCGGC-CGUGucAGcgGUCAg -3' miRNA: 3'- uCCGCUGGaGCCGcGCAC--UUuaCAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 36210 | 0.68 | 0.548161 |
Target: 5'- uGGCG-CCUCGGCGUaaucGAGGUcGUCGc -3' miRNA: 3'- uCCGCuGGAGCCGCGca--CUUUA-CAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 33255 | 0.66 | 0.723374 |
Target: 5'- cGGUGGCCUCGGCGCc---------- -3' miRNA: 3'- uCCGCUGGAGCCGCGcacuuuacagu -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 32739 | 0.73 | 0.320321 |
Target: 5'- cGGUGGCCUCGGCGauucGGGcUGUCAa -3' miRNA: 3'- uCCGCUGGAGCCGCgca-CUUuACAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 28076 | 0.66 | 0.709409 |
Target: 5'- uGGCGACCUCgcgcagcagggcgaGGUGCGUcgg--GUCGc -3' miRNA: 3'- uCCGCUGGAG--------------CCGCGCAcuuuaCAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 25828 | 0.68 | 0.558983 |
Target: 5'- cGGCGGCCUgGGCG-GUGGccUGcUCGg -3' miRNA: 3'- uCCGCUGGAgCCGCgCACUuuAC-AGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 25300 | 0.77 | 0.161995 |
Target: 5'- aGGGCGACgUCGGCGCGgu-GGUGcCAg -3' miRNA: 3'- -UCCGCUGgAGCCGCGCacuUUACaGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 23313 | 0.66 | 0.712644 |
Target: 5'- cGGCGGCCUccuccugcgccCGGCGgGcGAGAUcgagGUCGu -3' miRNA: 3'- uCCGCUGGA-----------GCCGCgCaCUUUA----CAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 22662 | 0.7 | 0.474646 |
Target: 5'- cGGCGGCCgucagGGCGCGcucgUGGgcGGUGUCGa -3' miRNA: 3'- uCCGCUGGag---CCGCGC----ACU--UUACAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 22583 | 0.78 | 0.153308 |
Target: 5'- aGGGUGGCCUCGGUGCGgccAcgGUCGa -3' miRNA: 3'- -UCCGCUGGAGCCGCGCacuUuaCAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 20840 | 0.67 | 0.646982 |
Target: 5'- -cGCGACgUCGGCGaCG-GGAuagGUCAg -3' miRNA: 3'- ucCGCUGgAGCCGC-GCaCUUua-CAGU- -5' |
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12786 | 3' | -55.3 | NC_003387.1 | + | 20056 | 0.67 | 0.658023 |
Target: 5'- cGGCGAgguucagCUCGGCguGCGUGAGcguuAUGUCc -3' miRNA: 3'- uCCGCUg------GAGCCG--CGCACUU----UACAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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