miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12787 5' -51 NC_003387.1 + 24839 0.66 0.917229
Target:  5'- gUGCGCUGUcUGCGGcc-----GGGUGCg -3'
miRNA:   3'- -ACGCGGCA-AUGCCaacuucuUCCACG- -5'
12787 5' -51 NC_003387.1 + 34316 0.66 0.896786
Target:  5'- cGCGCCuUUcCGGUUGAacAGGuAGGcGCc -3'
miRNA:   3'- aCGCGGcAAuGCCAACU--UCU-UCCaCG- -5'
12787 5' -51 NC_003387.1 + 34849 0.67 0.854517
Target:  5'- cGCGCgGgccuUGCGGU--GAGAgcagccggaaaugcAGGUGCg -3'
miRNA:   3'- aCGCGgCa---AUGCCAacUUCU--------------UCCACG- -5'
12787 5' -51 NC_003387.1 + 22247 0.67 0.848386
Target:  5'- gGCGCCG--ACGG--GAAGcacuuGGUGCa -3'
miRNA:   3'- aCGCGGCaaUGCCaaCUUCuu---CCACG- -5'
12787 5' -51 NC_003387.1 + 39156 0.67 0.848386
Target:  5'- cGCGCCGaggGCGuGUacuGGucGGUGCg -3'
miRNA:   3'- aCGCGGCaa-UGC-CAacuUCuuCCACG- -5'
12787 5' -51 NC_003387.1 + 38892 0.69 0.79133
Target:  5'- cGCGCCGaacCG--UGGAGcGGGUGCg -3'
miRNA:   3'- aCGCGGCaauGCcaACUUCuUCCACG- -5'
12787 5' -51 NC_003387.1 + 33771 0.69 0.781133
Target:  5'- gGCGCCGcgaGCGGUUuGGcccGGcuGGUGCc -3'
miRNA:   3'- aCGCGGCaa-UGCCAA-CU---UCuuCCACG- -5'
12787 5' -51 NC_003387.1 + 47534 0.69 0.770771
Target:  5'- gGCGaCCGUUACGGc-GAGGuc-GUGCu -3'
miRNA:   3'- aCGC-GGCAAUGCCaaCUUCuucCACG- -5'
12787 5' -51 NC_003387.1 + 29965 0.77 0.338568
Target:  5'- cGCGCCGUUucgcgagguauccGCaGGUgaGAGggGGUGCu -3'
miRNA:   3'- aCGCGGCAA-------------UG-CCAacUUCuuCCACG- -5'
12787 5' -51 NC_003387.1 + 46084 1.14 0.001238
Target:  5'- aUGCGCCGUUACGGUUGAAGAAGGUGCg -3'
miRNA:   3'- -ACGCGGCAAUGCCAACUUCUUCCACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.