miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12789 3' -59 NC_003387.1 + 43035 1.06 0.000746
Target:  5'- cCGUCACGGCCCCACGCCUCGACGAAAc -3'
miRNA:   3'- -GCAGUGCCGGGGUGCGGAGCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 51248 0.74 0.150278
Target:  5'- aCGUCGacgcccUGGCCCUcgACGaCCUCGACGAGGa -3'
miRNA:   3'- -GCAGU------GCCGGGG--UGC-GGAGCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 49822 0.73 0.196046
Target:  5'- --cCGCGGCCugCCGCGCC-CGGCGAGc -3'
miRNA:   3'- gcaGUGCCGG--GGUGCGGaGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 34608 0.72 0.234362
Target:  5'- aCG-UACGGCguccacgcauaauCCUGCGCCUCGACGAu- -3'
miRNA:   3'- -GCaGUGCCG-------------GGGUGCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 39268 0.71 0.247213
Target:  5'- cCGUCGCGGCCCU-UGCC-CGACa--- -3'
miRNA:   3'- -GCAGUGCCGGGGuGCGGaGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 48070 0.71 0.247213
Target:  5'- --cCGC-GCCCCgaaGCGCCUCGACGGGu -3'
miRNA:   3'- gcaGUGcCGGGG---UGCGGAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 7661 0.71 0.253535
Target:  5'- ---gACGGCCCUcgACGCgCUCGGCGAc- -3'
miRNA:   3'- gcagUGCCGGGG--UGCG-GAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 10757 0.71 0.257392
Target:  5'- --aCACGGCCgCGaucgccgguacgaGCCUCGACGAAAu -3'
miRNA:   3'- gcaGUGCCGGgGUg------------CGGAGCUGCUUU- -5'
12789 3' -59 NC_003387.1 + 10684 0.71 0.266578
Target:  5'- gGUCGaucuUGGCgCCCugGCgCUCGGCGAc- -3'
miRNA:   3'- gCAGU----GCCG-GGGugCG-GAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 50642 0.71 0.2733
Target:  5'- aGUCACGGCCCCcC-CCUCucacACGAAc -3'
miRNA:   3'- gCAGUGCCGGGGuGcGGAGc---UGCUUu -5'
12789 3' -59 NC_003387.1 + 20449 0.7 0.280157
Target:  5'- -cUCGCGcCCCCACGCCUUGuCGGc- -3'
miRNA:   3'- gcAGUGCcGGGGUGCGGAGCuGCUuu -5'
12789 3' -59 NC_003387.1 + 8326 0.7 0.280157
Target:  5'- --cUACGGCCCgGcCGaCCUCGACGAc- -3'
miRNA:   3'- gcaGUGCCGGGgU-GC-GGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 44741 0.7 0.287151
Target:  5'- uGUUGCGGCCCC-UGCUccgCGGCGAu- -3'
miRNA:   3'- gCAGUGCCGGGGuGCGGa--GCUGCUuu -5'
12789 3' -59 NC_003387.1 + 19240 0.7 0.294281
Target:  5'- gCGaUCGCGGgCgCCGacCGCCUCGGCGAc- -3'
miRNA:   3'- -GC-AGUGCCgG-GGU--GCGGAGCUGCUuu -5'
12789 3' -59 NC_003387.1 + 3362 0.7 0.301549
Target:  5'- uCGUCgACGGCaucaCCAagcugGCCUCGGCGGGc -3'
miRNA:   3'- -GCAG-UGCCGg---GGUg----CGGAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 30286 0.7 0.301549
Target:  5'- aCGcCGCGG-CCCGCGCCUgGgACGAc- -3'
miRNA:   3'- -GCaGUGCCgGGGUGCGGAgC-UGCUuu -5'
12789 3' -59 NC_003387.1 + 12351 0.69 0.348048
Target:  5'- aCGUCGaGGCCCUugGCCcCGGCc--- -3'
miRNA:   3'- -GCAGUgCCGGGGugCGGaGCUGcuuu -5'
12789 3' -59 NC_003387.1 + 40367 0.68 0.364645
Target:  5'- -aUCGCGGCCggggCCAaggGCCUCGACGu-- -3'
miRNA:   3'- gcAGUGCCGG----GGUg--CGGAGCUGCuuu -5'
12789 3' -59 NC_003387.1 + 27986 0.68 0.36803
Target:  5'- cCGUUGCGGCgCCCucgauuucggcgagcACGCgCUUGGCGAGc -3'
miRNA:   3'- -GCAGUGCCG-GGG---------------UGCG-GAGCUGCUUu -5'
12789 3' -59 NC_003387.1 + 19822 0.68 0.372291
Target:  5'- uGUC-CGGCaCCCGCGggucgaaucaaucUCUCGACGAc- -3'
miRNA:   3'- gCAGuGCCG-GGGUGC-------------GGAGCUGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.