miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12789 5' -53.3 NC_003387.1 + 2315 0.66 0.821534
Target:  5'- ----cUGGCGAaGCUGUCGgucaAGAAUGUg -3'
miRNA:   3'- gaagaGCCGCUcCGACAGC----UCUUACA- -5'
12789 5' -53.3 NC_003387.1 + 21294 0.66 0.812053
Target:  5'- -gUCgUCGuCGAGGCcGUCGAGcAGUGg -3'
miRNA:   3'- gaAG-AGCcGCUCCGaCAGCUC-UUACa -5'
12789 5' -53.3 NC_003387.1 + 14486 0.66 0.778419
Target:  5'- --gCUCGGCGAGGCcacuaagggcgcgcUGUCGAucgacccGAcgGg -3'
miRNA:   3'- gaaGAGCCGCUCCG--------------ACAGCU-------CUuaCa -5'
12789 5' -53.3 NC_003387.1 + 235 0.66 0.772281
Target:  5'- aCUUg-CGGUGAGccgccccaauGUUGUCGAGggUGUc -3'
miRNA:   3'- -GAAgaGCCGCUC----------CGACAGCUCuuACA- -5'
12789 5' -53.3 NC_003387.1 + 34801 0.67 0.739766
Target:  5'- --cCUUGGUguugucguagucgGGGGC-GUCGAGAAUGUu -3'
miRNA:   3'- gaaGAGCCG-------------CUCCGaCAGCUCUUACA- -5'
12789 5' -53.3 NC_003387.1 + 22537 0.67 0.724706
Target:  5'- --gCUCGGCGAcugcuccuugcccgaGGCgaucgcgcgggccugGUCGAGggUGg -3'
miRNA:   3'- gaaGAGCCGCU---------------CCGa--------------CAGCUCuuACa -5'
12789 5' -53.3 NC_003387.1 + 14319 0.68 0.675189
Target:  5'- --gCUCGGgGuGGUUGUCGAGGu--- -3'
miRNA:   3'- gaaGAGCCgCuCCGACAGCUCUuaca -5'
12789 5' -53.3 NC_003387.1 + 43836 0.68 0.664032
Target:  5'- -----gGGCGAGGCcgagGUCGGGGcgGUg -3'
miRNA:   3'- gaagagCCGCUCCGa---CAGCUCUuaCA- -5'
12789 5' -53.3 NC_003387.1 + 3168 0.69 0.641635
Target:  5'- --cCUCGGCGAGGCcGUaaucGGggUGa -3'
miRNA:   3'- gaaGAGCCGCUCCGaCAgc--UCuuACa -5'
12789 5' -53.3 NC_003387.1 + 46780 0.69 0.641635
Target:  5'- --gUUCGGCGA-GCUGaUCGAGAagGUGUu -3'
miRNA:   3'- gaaGAGCCGCUcCGAC-AGCUCU--UACA- -5'
12789 5' -53.3 NC_003387.1 + 26300 0.73 0.380465
Target:  5'- --gCUCGGCGuGGCUGUCGugcuGGcUGUg -3'
miRNA:   3'- gaaGAGCCGCuCCGACAGCu---CUuACA- -5'
12789 5' -53.3 NC_003387.1 + 43072 1.07 0.002037
Target:  5'- gCUUCUCGGCGAGGCUGUCGAGAAUGUc -3'
miRNA:   3'- -GAAGAGCCGCUCCGACAGCUCUUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.