miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 3' -54.9 NC_003387.1 + 28085 0.68 0.623507
Target:  5'- cGUCGAACcuaUCGaccaGGGCggcaacGACCUUGAGgCg -3'
miRNA:   3'- -CAGCUUGa--AGC----CCCG------CUGGAACUCgG- -5'
12790 3' -54.9 NC_003387.1 + 29203 0.67 0.645542
Target:  5'- aGUUGAACgauUCGGGGuCGGCgCgguuGGCCg -3'
miRNA:   3'- -CAGCUUGa--AGCCCC-GCUG-Gaac-UCGG- -5'
12790 3' -54.9 NC_003387.1 + 32613 0.7 0.494351
Target:  5'- cUCGGGCUcgccgCGGGGgcgcUGACCcuaUGAGCCu -3'
miRNA:   3'- cAGCUUGAa----GCCCC----GCUGGa--ACUCGG- -5'
12790 3' -54.9 NC_003387.1 + 33944 0.68 0.590536
Target:  5'- gGUCGAGCUUcggcagcuugcCGGGGuCGGgUaUGAGCUg -3'
miRNA:   3'- -CAGCUUGAA-----------GCCCC-GCUgGaACUCGG- -5'
12790 3' -54.9 NC_003387.1 + 34047 0.68 0.590536
Target:  5'- gGUCG-GCgugUGGGGCGGCCUaagcgcccagGAGCg -3'
miRNA:   3'- -CAGCuUGaa-GCCCCGCUGGAa---------CUCGg -5'
12790 3' -54.9 NC_003387.1 + 35151 0.66 0.711011
Target:  5'- gGUCGAcCagCGGGGCGuugucgcCCUUGucacccuucgGGCCg -3'
miRNA:   3'- -CAGCUuGaaGCCCCGCu------GGAAC----------UCGG- -5'
12790 3' -54.9 NC_003387.1 + 37466 0.72 0.396742
Target:  5'- cGUCGAccgACUucUCGGcGGCGACCgu--GCCu -3'
miRNA:   3'- -CAGCU---UGA--AGCC-CCGCUGGaacuCGG- -5'
12790 3' -54.9 NC_003387.1 + 38507 0.66 0.742845
Target:  5'- -gUGGGCgugCGaGGGCGGCaagUGAGCg -3'
miRNA:   3'- caGCUUGaa-GC-CCCGCUGga-ACUCGg -5'
12790 3' -54.9 NC_003387.1 + 40877 0.7 0.484073
Target:  5'- gGUCGGAUUUCcGcGGCGACCUaaucaaGGCCg -3'
miRNA:   3'- -CAGCUUGAAGcC-CCGCUGGAac----UCGG- -5'
12790 3' -54.9 NC_003387.1 + 41074 0.77 0.196258
Target:  5'- uGUCGAcGCgaucgaGGGGCGAUCgUGAGCCg -3'
miRNA:   3'- -CAGCU-UGaag---CCCCGCUGGaACUCGG- -5'
12790 3' -54.9 NC_003387.1 + 42455 1.11 0.000856
Target:  5'- uGUCGAACUUCGGGGCGACCUUGAGCCc -3'
miRNA:   3'- -CAGCUUGAAGCCCCGCUGGAACUCGG- -5'
12790 3' -54.9 NC_003387.1 + 43905 0.66 0.731273
Target:  5'- cGUCGAuaggccaAgUUCGGGcGCGAgC-UGAGCg -3'
miRNA:   3'- -CAGCU-------UgAAGCCC-CGCUgGaACUCGg -5'
12790 3' -54.9 NC_003387.1 + 44602 0.66 0.757375
Target:  5'- aGUCGAGCgacgccgUCGGGccguggcgcgagcguGUGGCCcUG-GCCg -3'
miRNA:   3'- -CAGCUUGa------AGCCC---------------CGCUGGaACuCGG- -5'
12790 3' -54.9 NC_003387.1 + 45065 0.68 0.634526
Target:  5'- -cCGAGCgcgUCGaGGGcCGuCCU-GGGCCg -3'
miRNA:   3'- caGCUUGa--AGC-CCC-GCuGGAaCUCGG- -5'
12790 3' -54.9 NC_003387.1 + 47142 0.7 0.494351
Target:  5'- cGUCGcggaucuuugccAGC-UCGGcGGCGucaGCCUUGAGCUg -3'
miRNA:   3'- -CAGC------------UUGaAGCC-CCGC---UGGAACUCGG- -5'
12790 3' -54.9 NC_003387.1 + 50456 0.68 0.590536
Target:  5'- cUCGGGCaccUCGGGGCGcCCacGcAGCCc -3'
miRNA:   3'- cAGCUUGa--AGCCCCGCuGGaaC-UCGG- -5'
12790 3' -54.9 NC_003387.1 + 51478 0.7 0.504728
Target:  5'- cGUCG-GCUUCGGuGGCGuACC---GGCCa -3'
miRNA:   3'- -CAGCuUGAAGCC-CCGC-UGGaacUCGG- -5'
12790 3' -54.9 NC_003387.1 + 51708 0.7 0.503686
Target:  5'- --aGAugUgCGGGGCGAUCUUGucgcgcuucgcgaGGCCc -3'
miRNA:   3'- cagCUugAaGCCCCGCUGGAAC-------------UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.