Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12790 | 5' | -59.6 | NC_003387.1 | + | 42491 | 1.11 | 0.000307 |
Target: 5'- cGCGGCUCAUCGCGUCGCGGAUGCCCGa -3' miRNA: 3'- -CGCCGAGUAGCGCAGCGCCUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 42705 | 0.72 | 0.200121 |
Target: 5'- uCGGCUCGUCGuCGUCGUc---GCCCGg -3' miRNA: 3'- cGCCGAGUAGC-GCAGCGccuaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 43372 | 0.72 | 0.200121 |
Target: 5'- cCGGCUCGUCGaCGUC-CuGGUGCUCGa -3' miRNA: 3'- cGCCGAGUAGC-GCAGcGcCUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 44022 | 0.76 | 0.120965 |
Target: 5'- aGCGGCUCGUCGaCGUCggucggcaGCGGcGUGCCg- -3' miRNA: 3'- -CGCCGAGUAGC-GCAG--------CGCC-UACGGgc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 44965 | 0.69 | 0.352169 |
Target: 5'- cGCGGCUCAggcCGCGaUCGCcGcUGCCg- -3' miRNA: 3'- -CGCCGAGUa--GCGC-AGCGcCuACGGgc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 46132 | 0.66 | 0.518301 |
Target: 5'- cGCGGaaCAccggguugccguUCGCGUCGCGaAUGUUCGc -3' miRNA: 3'- -CGCCgaGU------------AGCGCAGCGCcUACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 47123 | 0.68 | 0.360364 |
Target: 5'- uGCaGCUCGcucuuuUCGcCGUCGCGGAUcuuugccaGCUCGg -3' miRNA: 3'- -CGcCGAGU------AGC-GCAGCGCCUA--------CGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 49191 | 0.72 | 0.205342 |
Target: 5'- gGCGGC-CGUCGaCGUUGCuGA-GCCCGc -3' miRNA: 3'- -CGCCGaGUAGC-GCAGCGcCUaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 50187 | 0.66 | 0.518301 |
Target: 5'- cGCGGCgac-CGCGU-GCGGAacaccgGCCCc -3' miRNA: 3'- -CGCCGaguaGCGCAgCGCCUa-----CGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 50572 | 0.66 | 0.518301 |
Target: 5'- cGCGGCUCAUCGaguccUCGgGGAacUCCa -3' miRNA: 3'- -CGCCGAGUAGCgc---AGCgCCUacGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 50758 | 0.66 | 0.518301 |
Target: 5'- --cGCagGUCGgGUCGCGGcgGUCCc -3' miRNA: 3'- cgcCGagUAGCgCAGCGCCuaCGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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