Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12790 | 5' | -59.6 | NC_003387.1 | + | 11639 | 0.72 | 0.198577 |
Target: 5'- cGCGGCUCAcgaucgccccucgaUCGCGUCGaCaGcgGCCuCGg -3' miRNA: 3'- -CGCCGAGU--------------AGCGCAGC-GcCuaCGG-GC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 10751 | 0.68 | 0.376299 |
Target: 5'- gGCGGcCUCcgCGCGcagcuccUCGCuGGcgGCCUGc -3' miRNA: 3'- -CGCC-GAGuaGCGC-------AGCG-CCuaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 9610 | 0.67 | 0.449336 |
Target: 5'- cGCGGCgCcgCGcCGUCGCGcucguacccGgcGCCCGu -3' miRNA: 3'- -CGCCGaGuaGC-GCAGCGC---------CuaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 8843 | 0.72 | 0.205342 |
Target: 5'- aGCGGCUCAcCGUG-CGCGaugGCCCa -3' miRNA: 3'- -CGCCGAGUaGCGCaGCGCcuaCGGGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 6895 | 0.67 | 0.430568 |
Target: 5'- cGCGGCgUCGUCGCGggccaucagcCGCGGGacauUGUCgGc -3' miRNA: 3'- -CGCCG-AGUAGCGCa---------GCGCCU----ACGGgC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 3989 | 0.7 | 0.298546 |
Target: 5'- cGCGGgUCAUgGacuCGUCGCGGcgcacgGUGCUCGa -3' miRNA: 3'- -CGCCgAGUAgC---GCAGCGCC------UACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 3724 | 0.66 | 0.518301 |
Target: 5'- aGCGGCcaCAgccaCGCGaUCGaCGGccgcAUGCCCGc -3' miRNA: 3'- -CGCCGa-GUa---GCGC-AGC-GCC----UACGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 2923 | 0.76 | 0.114576 |
Target: 5'- cCGGCUgAUCGUGUCGCGGuucgGCgCCa -3' miRNA: 3'- cGCCGAgUAGCGCAGCGCCua--CG-GGc -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 487 | 0.69 | 0.328381 |
Target: 5'- aGCuGCUCGUCGCGaUGCGc--GCCCGc -3' miRNA: 3'- -CGcCGAGUAGCGCaGCGCcuaCGGGC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 373 | 0.66 | 0.508171 |
Target: 5'- cUGGCUCGUCGCGgCGaauGAUGCgaCGg -3' miRNA: 3'- cGCCGAGUAGCGCaGCgc-CUACGg-GC- -5' |
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12790 | 5' | -59.6 | NC_003387.1 | + | 207 | 0.73 | 0.171169 |
Target: 5'- gGCGGCUUGUCGCucuuGUCGCGGuUGCaCUu -3' miRNA: 3'- -CGCCGAGUAGCG----CAGCGCCuACG-GGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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