miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12790 5' -59.6 NC_003387.1 + 43372 0.72 0.200121
Target:  5'- cCGGCUCGUCGaCGUC-CuGGUGCUCGa -3'
miRNA:   3'- cGCCGAGUAGC-GCAGcGcCUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 8843 0.72 0.205342
Target:  5'- aGCGGCUCAcCGUG-CGCGaugGCCCa -3'
miRNA:   3'- -CGCCGAGUaGCGCaGCGCcuaCGGGc -5'
12790 5' -59.6 NC_003387.1 + 39252 0.72 0.216138
Target:  5'- gGUGGUgcccUCcUCGcCGUCGCGGcccuUGCCCGa -3'
miRNA:   3'- -CGCCG----AGuAGC-GCAGCGCCu---ACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 28891 0.7 0.270853
Target:  5'- gGCGGCUUAggCGCGggCGcCGGGccaccGCCCGa -3'
miRNA:   3'- -CGCCGAGUa-GCGCa-GC-GCCUa----CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 23398 0.69 0.336176
Target:  5'- gGCGGCUUucagCGCGgccuggCGCucGUGCCCGc -3'
miRNA:   3'- -CGCCGAGua--GCGCa-----GCGccUACGGGC- -5'
12790 5' -59.6 NC_003387.1 + 47123 0.68 0.360364
Target:  5'- uGCaGCUCGcucuuuUCGcCGUCGCGGAUcuuugccaGCUCGg -3'
miRNA:   3'- -CGcCGAGU------AGC-GCAGCGCCUA--------CGGGC- -5'
12790 5' -59.6 NC_003387.1 + 10751 0.68 0.376299
Target:  5'- gGCGGcCUCcgCGCGcagcuccUCGCuGGcgGCCUGc -3'
miRNA:   3'- -CGCC-GAGuaGCGC-------AGCG-CCuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 24708 0.68 0.377151
Target:  5'- uCGGCUUGcCGCGcUCGUcGGUGCCCu -3'
miRNA:   3'- cGCCGAGUaGCGC-AGCGcCUACGGGc -5'
12790 5' -59.6 NC_003387.1 + 21531 0.67 0.430568
Target:  5'- -aGGCgcgCGUCGCGuUCGaCGuGccGCCCGg -3'
miRNA:   3'- cgCCGa--GUAGCGC-AGC-GC-CuaCGGGC- -5'
12790 5' -59.6 NC_003387.1 + 6895 0.67 0.430568
Target:  5'- cGCGGCgUCGUCGCGggccaucagcCGCGGGacauUGUCgGc -3'
miRNA:   3'- -CGCCG-AGUAGCGCa---------GCGCCU----ACGGgC- -5'
12790 5' -59.6 NC_003387.1 + 20773 0.66 0.518301
Target:  5'- uGCGGC-CGgggaUGCGaccggCGCGGAucUGCUCGg -3'
miRNA:   3'- -CGCCGaGUa---GCGCa----GCGCCU--ACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.