miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12792 3' -60.2 NC_003387.1 + 36219 0.66 0.46702
Target:  5'- -gCAGAGUCauucccgagcuGACCGUguacgccgacccgcuGCCCUGCuCGAa -3'
miRNA:   3'- gaGUCUCAG-----------CUGGCG---------------CGGGACGcGCU- -5'
12792 3' -60.2 NC_003387.1 + 38219 0.66 0.463143
Target:  5'- gUCGG-GUCGAUcgacagCGCGCCCUuaGUGGc -3'
miRNA:   3'- gAGUCuCAGCUG------GCGCGGGAcgCGCU- -5'
12792 3' -60.2 NC_003387.1 + 16761 0.66 0.463143
Target:  5'- --gAGGGccuccUCGACCGCGgCCUuCGCGGc -3'
miRNA:   3'- gagUCUC-----AGCUGGCGCgGGAcGCGCU- -5'
12792 3' -60.2 NC_003387.1 + 934 0.66 0.453523
Target:  5'- aCUCGGGG-CGAUCGaCGCCCaGCcaccagucggGCGGg -3'
miRNA:   3'- -GAGUCUCaGCUGGC-GCGGGaCG----------CGCU- -5'
12792 3' -60.2 NC_003387.1 + 45920 0.66 0.453523
Target:  5'- -gCAGuacGUCGGCaCGUGCCCgaGCGUGu -3'
miRNA:   3'- gaGUCu--CAGCUG-GCGCGGGa-CGCGCu -5'
12792 3' -60.2 NC_003387.1 + 46890 0.66 0.444014
Target:  5'- -cCGGAcuugaGGCCGCcccGCCUUGCGCGGg -3'
miRNA:   3'- gaGUCUcag--CUGGCG---CGGGACGCGCU- -5'
12792 3' -60.2 NC_003387.1 + 49479 0.66 0.444013
Target:  5'- aCUUGGuuUCGGCCgguGCGCCCgcccgGCGuCGAc -3'
miRNA:   3'- -GAGUCucAGCUGG---CGCGGGa----CGC-GCU- -5'
12792 3' -60.2 NC_003387.1 + 46945 0.66 0.444013
Target:  5'- --aGGuGUCGAuCCGCGgCgaGCGCGGc -3'
miRNA:   3'- gagUCuCAGCU-GGCGCgGgaCGCGCU- -5'
12792 3' -60.2 NC_003387.1 + 7887 0.66 0.434617
Target:  5'- cCUUgaGGUCGGCCGCacucguGCCC-GCGCGc -3'
miRNA:   3'- -GAGucUCAGCUGGCG------CGGGaCGCGCu -5'
12792 3' -60.2 NC_003387.1 + 37307 0.66 0.434617
Target:  5'- -gCGGucGUCGACCGCGCCgacgUGcCGUGGa -3'
miRNA:   3'- gaGUCu-CAGCUGGCGCGGg---AC-GCGCU- -5'
12792 3' -60.2 NC_003387.1 + 51024 0.66 0.434617
Target:  5'- gCUCAGcgauccAGUCGACCGcCGCCgCgGUGuCGGu -3'
miRNA:   3'- -GAGUC------UCAGCUGGC-GCGG-GaCGC-GCU- -5'
12792 3' -60.2 NC_003387.1 + 19260 0.66 0.425337
Target:  5'- cCUCGGcGacuUCGGCC--GCCUUGCGCGAg -3'
miRNA:   3'- -GAGUCuC---AGCUGGcgCGGGACGCGCU- -5'
12792 3' -60.2 NC_003387.1 + 18406 0.66 0.425337
Target:  5'- ---cGGGUCGGCCGCGggCaGCGCGGg -3'
miRNA:   3'- gaguCUCAGCUGGCGCggGaCGCGCU- -5'
12792 3' -60.2 NC_003387.1 + 6369 0.66 0.424416
Target:  5'- gCUUGGccUCGGCCGCgggcgacGCCUUGCGUGGg -3'
miRNA:   3'- -GAGUCucAGCUGGCG-------CGGGACGCGCU- -5'
12792 3' -60.2 NC_003387.1 + 26056 0.67 0.412545
Target:  5'- aUC-GAGUaccacauucgcgaGGCUGCGCCCgGCGUGAc -3'
miRNA:   3'- gAGuCUCAg------------CUGGCGCGGGaCGCGCU- -5'
12792 3' -60.2 NC_003387.1 + 6651 0.67 0.407136
Target:  5'- gCUCGucGUCGACC-CGCUCaaGCGCGGu -3'
miRNA:   3'- -GAGUcuCAGCUGGcGCGGGa-CGCGCU- -5'
12792 3' -60.2 NC_003387.1 + 18592 0.67 0.398221
Target:  5'- gUCAGGGUCGcCCGC-CUCggugGCGCu- -3'
miRNA:   3'- gAGUCUCAGCuGGCGcGGGa---CGCGcu -5'
12792 3' -60.2 NC_003387.1 + 48005 0.67 0.398221
Target:  5'- aCUCGGccUCGGCCGguucccaGCCCUGCuCGAc -3'
miRNA:   3'- -GAGUCucAGCUGGCg------CGGGACGcGCU- -5'
12792 3' -60.2 NC_003387.1 + 24878 0.67 0.389432
Target:  5'- cCUCGGGcggUGGCUGCGCCCUGUccacCGAc -3'
miRNA:   3'- -GAGUCUca-GCUGGCGCGGGACGc---GCU- -5'
12792 3' -60.2 NC_003387.1 + 23225 0.67 0.38422
Target:  5'- gUCAGccGGUCGacgcccaucucgcggGCCGUGCCCUGCuCGc -3'
miRNA:   3'- gAGUC--UCAGC---------------UGGCGCGGGACGcGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.