Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12792 | 5' | -57.7 | NC_003387.1 | + | 41821 | 1.05 | 0.000823 |
Target: 5'- cUGCAGCGCGUCGCCGCUGACGUGAAAc -3' miRNA: 3'- -ACGUCGCGCAGCGGCGACUGCACUUU- -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 3206 | 0.78 | 0.094788 |
Target: 5'- aGCAGCGCaagcUCGCCGCgaaGCGUGAAAg -3' miRNA: 3'- aCGUCGCGc---AGCGGCGac-UGCACUUU- -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 43119 | 0.74 | 0.16139 |
Target: 5'- cGaCGGCGCGgCGCCGCgGugGUGGGc -3' miRNA: 3'- aC-GUCGCGCaGCGGCGaCugCACUUu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 35832 | 0.7 | 0.303285 |
Target: 5'- cUGCAGCGCGUCGgCuaUGuCGUGc-- -3' miRNA: 3'- -ACGUCGCGCAGCgGcgACuGCACuuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 14825 | 0.7 | 0.318668 |
Target: 5'- gGCAGCGgGUCGCCcucgggGUUGACGcGGu- -3' miRNA: 3'- aCGUCGCgCAGCGG------CGACUGCaCUuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 21706 | 0.7 | 0.33463 |
Target: 5'- gGCgAGCGCGgcccgCGCCGacCUGGuCGUGGAAa -3' miRNA: 3'- aCG-UCGCGCa----GCGGC--GACU-GCACUUU- -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 49604 | 0.69 | 0.359653 |
Target: 5'- gGCAGUGC--UGCCGCUGGCGg---- -3' miRNA: 3'- aCGUCGCGcaGCGGCGACUGCacuuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 30964 | 0.69 | 0.36828 |
Target: 5'- -aCAGCGCGUCGguggCGCUGACGccGAGc -3' miRNA: 3'- acGUCGCGCAGCg---GCGACUGCa-CUUu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 12816 | 0.69 | 0.377047 |
Target: 5'- cGCAGU-CGUCGCCggggcaGUUGugGUGAGg -3' miRNA: 3'- aCGUCGcGCAGCGG------CGACugCACUUu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 18319 | 0.68 | 0.394999 |
Target: 5'- gGCgAGUGCGUCGUCGCUGGuCGc---- -3' miRNA: 3'- aCG-UCGCGCAGCGGCGACU-GCacuuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 33985 | 0.68 | 0.40418 |
Target: 5'- cGCAGCGgGUCGCgGUcGACGa---- -3' miRNA: 3'- aCGUCGCgCAGCGgCGaCUGCacuuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 32861 | 0.68 | 0.413494 |
Target: 5'- uUGCAGgGCGcccagCGCCGCgucGGCGUcgucGAGAg -3' miRNA: 3'- -ACGUCgCGCa----GCGGCGa--CUGCA----CUUU- -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 20513 | 0.68 | 0.432513 |
Target: 5'- cGCAGCGCGgcgucgcgcUCGUCGgUGACGa---- -3' miRNA: 3'- aCGUCGCGC---------AGCGGCgACUGCacuuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 28372 | 0.67 | 0.442212 |
Target: 5'- cGCAGgGCGggcgcaacUCGUgGCUGACGcagGAAAc -3' miRNA: 3'- aCGUCgCGC--------AGCGgCGACUGCa--CUUU- -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 633 | 0.67 | 0.472024 |
Target: 5'- gGCAGCGuCGcCGCCGCggcagcGACGcccgaUGAAc -3' miRNA: 3'- aCGUCGC-GCaGCGGCGa-----CUGC-----ACUUu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 7375 | 0.67 | 0.482186 |
Target: 5'- --gAGCGCGUCGCCugaGCUGcACG-GAu- -3' miRNA: 3'- acgUCGCGCAGCGG---CGAC-UGCaCUuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 5715 | 0.67 | 0.492452 |
Target: 5'- gUGCc-CGCGUCGUCGCUGACc----- -3' miRNA: 3'- -ACGucGCGCAGCGGCGACUGcacuuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 12335 | 0.66 | 0.502819 |
Target: 5'- gUGCAGC---UCGCCGCcGACGUcGAGg -3' miRNA: 3'- -ACGUCGcgcAGCGGCGaCUGCA-CUUu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 39698 | 0.66 | 0.506992 |
Target: 5'- cGCAGCGCGugcagcagcggcagaUCggGCUGCUGACGa---- -3' miRNA: 3'- aCGUCGCGC---------------AG--CGGCGACUGCacuuu -5' |
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12792 | 5' | -57.7 | NC_003387.1 | + | 41138 | 0.66 | 0.523827 |
Target: 5'- gGCAGCGCGcCgacgGCCGCUGcgaGUGu-- -3' miRNA: 3'- aCGUCGCGCaG----CGGCGACug-CACuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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