Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12792 | 5' | -57.7 | NC_003387.1 | + | 21706 | 0.7 | 0.33463 |
|
Target: 5'- gGCgAGCGCGgcccgCGCCGacCUGGuCGUGGAAa -3' miRNA: 3'- aCG-UCGCGCa----GCGGC--GACU-GCACUUU- -5' |
|||||||
| 12792 | 5' | -57.7 | NC_003387.1 | + | 14825 | 0.7 | 0.318668 |
|
Target: 5'- gGCAGCGgGUCGCCcucgggGUUGACGcGGu- -3' miRNA: 3'- aCGUCGCgCAGCGG------CGACUGCaCUuu -5' |
|||||||
| 12792 | 5' | -57.7 | NC_003387.1 | + | 35832 | 0.7 | 0.303285 |
|
Target: 5'- cUGCAGCGCGUCGgCuaUGuCGUGc-- -3' miRNA: 3'- -ACGUCGCGCAGCgGcgACuGCACuuu -5' |
|||||||
| 12792 | 5' | -57.7 | NC_003387.1 | + | 43119 | 0.74 | 0.16139 |
|
Target: 5'- cGaCGGCGCGgCGCCGCgGugGUGGGc -3' miRNA: 3'- aC-GUCGCGCaGCGGCGaCugCACUUu -5' |
|||||||
| 12792 | 5' | -57.7 | NC_003387.1 | + | 3206 | 0.78 | 0.094788 |
|
Target: 5'- aGCAGCGCaagcUCGCCGCgaaGCGUGAAAg -3' miRNA: 3'- aCGUCGCGc---AGCGGCGac-UGCACUUU- -5' |
|||||||
| 12792 | 5' | -57.7 | NC_003387.1 | + | 41821 | 1.05 | 0.000823 |
|
Target: 5'- cUGCAGCGCGUCGCCGCUGACGUGAAAc -3' miRNA: 3'- -ACGUCGCGCAGCGGCGACUGCACUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home